Hb_000161_070

Information

Type -
Description -
Location Contig161: 94413-99877
Sequence    

Annotation

kegg
ID cit:102610975
description ATP phosphoribosyltransferase 2, chloroplastic-like
nr
ID XP_012066644.1
description PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
swissprot
ID Q8GSJ1
description ATP phosphoribosyltransferase 2, chloroplastic OS=Arabidopsis thaliana GN=HISN1B PE=1 SV=1
trembl
ID A0A067L1W5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00214 PE=4 SV=1
Gene Ontology
ID GO:0005737
description atp phosphoribosyltransferase chloroplastic-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14423: 94413-99862 , PASA_asmbl_14424: 95883-96001
cDNA
(Sanger)
(ID:Location)		 022_L02.ab1: 96983-99859 , 032_J09.ab1: 96608-99862 , 038_D02.ab1: 96084-99862 , 043_D16.ab1: 96039-99862 , 049_J15.ab1: 96810-99863

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_070 0.0 - - PREDICTED: ATP phosphoribosyltransferase 2, chloroplastic-like [Jatropha curcas]
2 Hb_003401_050 0.1043325132 - - PREDICTED: origin of replication complex subunit 2 [Jatropha curcas]
3 Hb_000635_250 0.1143912883 - - PREDICTED: uncharacterized protein LOC105635484 [Jatropha curcas]
4 Hb_110291_010 0.1191784427 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000959_260 0.1203181547 - - PREDICTED: ribonuclease P protein subunit p25-like protein [Jatropha curcas]
6 Hb_000120_730 0.1227191253 - - hypothetical protein POPTR_0005s033002g, partial [Populus trichocarpa]
7 Hb_005883_060 0.1238259053 - - PREDICTED: polynucleotide 5'-hydroxyl-kinase NOL9 isoform X1 [Jatropha curcas]
8 Hb_148025_010 0.1248220278 - - PREDICTED: disease resistance protein RPS6-like isoform X2 [Jatropha curcas]
9 Hb_007881_030 0.1294899032 - - Protein YME1, putative [Ricinus communis]
10 Hb_002762_120 0.1303959617 - - PREDICTED: uncharacterized protein LOC105640350 isoform X1 [Jatropha curcas]
11 Hb_001638_170 0.1304884536 - - hypothetical protein Csa_3G118170 [Cucumis sativus]
12 Hb_022693_060 0.1307008267 - - -
13 Hb_004143_060 0.1327670966 - - DNA binding protein, putative [Ricinus communis]
14 Hb_008092_040 0.1339948238 - - PREDICTED: DNA-directed RNA polymerases II and IV subunit 5A-like [Jatropha curcas]
15 Hb_002835_080 0.1346500906 - - PREDICTED: 50S ribosomal protein L19-1, chloroplastic-like [Jatropha curcas]
16 Hb_143398_010 0.1353270424 - - PREDICTED: peter Pan-like protein [Jatropha curcas]
17 Hb_002182_080 0.1354261155 - - 3-5 exonuclease, putative [Ricinus communis]
18 Hb_032225_010 0.1368635776 - - protein phosphatase 2c, putative [Ricinus communis]
19 Hb_004060_020 0.136951466 - - nucleic acid binding protein, putative [Ricinus communis]
20 Hb_001677_060 0.1386420007 - - PREDICTED: eukaryotic translation initiation factor 3 subunit G-like [Jatropha curcas]

Gene co-expression network

sample Hb_000161_070 Hb_000161_070 Hb_003401_050 Hb_003401_050 Hb_000161_070--Hb_003401_050 Hb_000635_250 Hb_000635_250 Hb_000161_070--Hb_000635_250 Hb_110291_010 Hb_110291_010 Hb_000161_070--Hb_110291_010 Hb_000959_260 Hb_000959_260 Hb_000161_070--Hb_000959_260 Hb_000120_730 Hb_000120_730 Hb_000161_070--Hb_000120_730 Hb_005883_060 Hb_005883_060 Hb_000161_070--Hb_005883_060 Hb_003401_050--Hb_005883_060 Hb_003401_050--Hb_000635_250 Hb_002044_080 Hb_002044_080 Hb_003401_050--Hb_002044_080 Hb_005895_030 Hb_005895_030 Hb_003401_050--Hb_005895_030 Hb_000608_250 Hb_000608_250 Hb_003401_050--Hb_000608_250 Hb_001258_040 Hb_001258_040 Hb_000635_250--Hb_001258_040 Hb_001545_120 Hb_001545_120 Hb_000635_250--Hb_001545_120 Hb_000635_250--Hb_002044_080 Hb_044728_010 Hb_044728_010 Hb_000635_250--Hb_044728_010 Hb_002725_120 Hb_002725_120 Hb_000635_250--Hb_002725_120 Hb_009767_110 Hb_009767_110 Hb_000635_250--Hb_009767_110 Hb_003878_070 Hb_003878_070 Hb_110291_010--Hb_003878_070 Hb_001638_170 Hb_001638_170 Hb_110291_010--Hb_001638_170 Hb_004143_060 Hb_004143_060 Hb_110291_010--Hb_004143_060 Hb_009218_010 Hb_009218_010 Hb_110291_010--Hb_009218_010 Hb_001014_160 Hb_001014_160 Hb_110291_010--Hb_001014_160 Hb_165928_020 Hb_165928_020 Hb_110291_010--Hb_165928_020 Hb_010504_020 Hb_010504_020 Hb_000959_260--Hb_010504_020 Hb_002835_080 Hb_002835_080 Hb_000959_260--Hb_002835_080 Hb_012008_020 Hb_012008_020 Hb_000959_260--Hb_012008_020 Hb_148644_010 Hb_148644_010 Hb_000959_260--Hb_148644_010 Hb_001489_150 Hb_001489_150 Hb_000959_260--Hb_001489_150 Hb_002477_330 Hb_002477_330 Hb_000959_260--Hb_002477_330 Hb_000210_180 Hb_000210_180 Hb_000120_730--Hb_000210_180 Hb_000120_730--Hb_110291_010 Hb_000373_280 Hb_000373_280 Hb_000120_730--Hb_000373_280 Hb_018838_030 Hb_018838_030 Hb_000120_730--Hb_018838_030 Hb_000120_730--Hb_003878_070 Hb_148025_010 Hb_148025_010 Hb_000120_730--Hb_148025_010 Hb_001512_030 Hb_001512_030 Hb_005883_060--Hb_001512_030 Hb_000120_460 Hb_000120_460 Hb_005883_060--Hb_000120_460 Hb_025240_040 Hb_025240_040 Hb_005883_060--Hb_025240_040 Hb_000985_030 Hb_000985_030 Hb_005883_060--Hb_000985_030 Hb_058999_020 Hb_058999_020 Hb_005883_060--Hb_058999_020 Hb_002182_080 Hb_002182_080 Hb_005883_060--Hb_002182_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
28.5553 15.6409 15.7172 15.3358 8.61076 56.5471
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
24.4954 41.8802 23.9004 19.0392 23.096

CAGE analysis