Hb_000161_100

Information

Type -
Description -
Location Contig161: 126573-139365
Sequence    

Annotation

kegg
ID fve:101313989
description ribosome biogenesis protein BOP1 homolog
nr
ID XP_007048678.1
description Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
swissprot
ID A5DWF4
description Ribosome biogenesis protein ERB1 OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS 2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=ERB1 PE=3 SV=1
trembl
ID A0A061DJP9
description Transducin/WD40 repeat-like superfamily protein isoform 2 OS=Theobroma cacao GN=TCM_001697 PE=4 SV=1
Gene Ontology
ID GO:0005634
description ribosome biogenesis protein bop1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14425: 138041-138328
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_100 0.0 - - Transducin/WD40 repeat-like superfamily protein isoform 2 [Theobroma cacao]
2 Hb_000211_080 0.1264393116 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
3 Hb_000156_030 0.1267203958 - - conserved hypothetical protein [Ricinus communis]
4 Hb_003673_020 0.132619826 - - hypothetical protein JCGZ_20998 [Jatropha curcas]
5 Hb_000018_160 0.1334724234 - - nitrate transporter, putative [Ricinus communis]
6 Hb_000005_320 0.1336910816 - - conserved hypothetical protein [Ricinus communis]
7 Hb_031073_010 0.1367063193 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor GT-2-like [Jatropha curcas]
8 Hb_035360_010 0.1478234182 - - PREDICTED: putative G3BP-like protein [Jatropha curcas]
9 Hb_001017_100 0.1498381584 - - PREDICTED: uncharacterized protein LOC105644705 [Jatropha curcas]
10 Hb_005568_070 0.1508789639 - - PREDICTED: protein NRT1/ PTR FAMILY 2.6-like [Gossypium raimondii]
11 Hb_000173_210 0.1530547832 - - PREDICTED: serine incorporator 3 [Jatropha curcas]
12 Hb_172256_010 0.1549250408 - - PREDICTED: probable isoleucine--tRNA ligase, cytoplasmic [Jatropha curcas]
13 Hb_002897_040 0.162984382 - - PREDICTED: LOW QUALITY PROTEIN: protein NETWORKED 4A [Jatropha curcas]
14 Hb_000211_090 0.1635267786 - - hypothetical protein PHAVU_011G023400g, partial [Phaseolus vulgaris]
15 Hb_000544_120 0.1652658358 - - PREDICTED: thymidylate kinase [Jatropha curcas]
16 Hb_003666_050 0.1657927666 - - PREDICTED: NASP-related protein sim3 [Jatropha curcas]
17 Hb_003540_140 0.1682127999 - - PREDICTED: choline transporter-like protein 2 [Jatropha curcas]
18 Hb_000619_070 0.16831413 - - PREDICTED: DNA mismatch repair protein MLH1 [Jatropha curcas]
19 Hb_000779_040 0.1720860918 - - PREDICTED: protein FLX-like 4 [Jatropha curcas]
20 Hb_000038_150 0.1746852972 - - PREDICTED: E3 ubiquitin-protein ligase RNF181 homolog [Jatropha curcas]

Gene co-expression network

sample Hb_000161_100 Hb_000161_100 Hb_000211_080 Hb_000211_080 Hb_000161_100--Hb_000211_080 Hb_000156_030 Hb_000156_030 Hb_000161_100--Hb_000156_030 Hb_003673_020 Hb_003673_020 Hb_000161_100--Hb_003673_020 Hb_000018_160 Hb_000018_160 Hb_000161_100--Hb_000018_160 Hb_000005_320 Hb_000005_320 Hb_000161_100--Hb_000005_320 Hb_031073_010 Hb_031073_010 Hb_000161_100--Hb_031073_010 Hb_172256_010 Hb_172256_010 Hb_000211_080--Hb_172256_010 Hb_000211_080--Hb_003673_020 Hb_000779_040 Hb_000779_040 Hb_000211_080--Hb_000779_040 Hb_000792_110 Hb_000792_110 Hb_000211_080--Hb_000792_110 Hb_035360_010 Hb_035360_010 Hb_000211_080--Hb_035360_010 Hb_000211_090 Hb_000211_090 Hb_000211_080--Hb_000211_090 Hb_003540_140 Hb_003540_140 Hb_000156_030--Hb_003540_140 Hb_000329_540 Hb_000329_540 Hb_000156_030--Hb_000329_540 Hb_004032_460 Hb_004032_460 Hb_000156_030--Hb_004032_460 Hb_000441_230 Hb_000441_230 Hb_000156_030--Hb_000441_230 Hb_002897_040 Hb_002897_040 Hb_000156_030--Hb_002897_040 Hb_003673_020--Hb_035360_010 Hb_003673_020--Hb_000779_040 Hb_003673_020--Hb_000211_090 Hb_000619_070 Hb_000619_070 Hb_003673_020--Hb_000619_070 Hb_003666_050 Hb_003666_050 Hb_003673_020--Hb_003666_050 Hb_000018_160--Hb_000211_080 Hb_000018_160--Hb_035360_010 Hb_005568_070 Hb_005568_070 Hb_000018_160--Hb_005568_070 Hb_000018_160--Hb_000619_070 Hb_000544_120 Hb_000544_120 Hb_000018_160--Hb_000544_120 Hb_000005_320--Hb_003673_020 Hb_000005_320--Hb_000156_030 Hb_061256_030 Hb_061256_030 Hb_000005_320--Hb_061256_030 Hb_003226_170 Hb_003226_170 Hb_000005_320--Hb_003226_170 Hb_000005_320--Hb_002897_040 Hb_031073_010--Hb_000544_120 Hb_005228_120 Hb_005228_120 Hb_031073_010--Hb_005228_120 Hb_031073_010--Hb_002897_040 Hb_008406_130 Hb_008406_130 Hb_031073_010--Hb_008406_130 Hb_004712_110 Hb_004712_110 Hb_031073_010--Hb_004712_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
33.3829 3.4245 1.9624 1.68061 45.6913 27.6617
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.28874 1.10582 1.79322 1.33876 3.87035

CAGE analysis