Hb_000161_120

Information

Type -
Description -
Location Contig161: 140698-142937
Sequence    

Annotation

kegg
ID pop:POPTR_0004s23120g
description hypothetical protein
nr
ID CBI25674.3
description unnamed protein product [Vitis vinifera]
swissprot
ID A9UZS7
description Ribosome biogenesis protein BOP1 homolog OS=Monosiga brevicollis GN=37129 PE=3 SV=1
trembl
ID F6HCQ7
description Ribosome biogenesis protein BOP1 homolog OS=Vitis vinifera GN=VIT_00s0227g00060 PE=3 SV=1
Gene Ontology
ID GO:0005654
description ribosome biogenesis protein bop1 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_120 0.0 - - unnamed protein product [Vitis vinifera]
2 Hb_000996_170 0.1441839557 - - unknown [Glycine max]
3 Hb_136731_010 0.1545988629 - - PREDICTED: uncharacterized protein LOC105628378 isoform X4 [Jatropha curcas]
4 Hb_000176_120 0.1588733862 - - seryl-tRNA synthetase, putative [Ricinus communis]
5 Hb_150360_010 0.1591949247 - - hypothetical protein JCGZ_16890 [Jatropha curcas]
6 Hb_005054_070 0.161685591 - - unnamed protein product [Vitis vinifera]
7 Hb_012052_010 0.1657120282 - - PREDICTED: uncharacterized protein LOC103323653 [Prunus mume]
8 Hb_001377_180 0.1658753053 - - PREDICTED: glucose-1-phosphate adenylyltransferase large subunit 1 [Jatropha curcas]
9 Hb_006487_060 0.1677983812 - - Defective in cullin neddylation protein, putative [Ricinus communis]
10 Hb_006252_010 0.1691667785 - - PREDICTED: alpha-ketoglutarate-dependent dioxygenase alkB homolog 6 isoform X1 [Jatropha curcas]
11 Hb_005085_030 0.1702355625 - - PREDICTED: N-acetyltransferase 9-like protein isoform X1 [Jatropha curcas]
12 Hb_150023_010 0.1711909566 - - 50S ribosomal protein L2, putative [Ricinus communis]
13 Hb_006663_090 0.1736048306 - - hypothetical protein B456_010G1255001, partial [Gossypium raimondii]
14 Hb_000825_030 0.1747418055 - - zinc binding dehydrogenase, putative [Ricinus communis]
15 Hb_000991_070 0.1753405225 - - phytochrome A specific signal transduction component family protein [Populus trichocarpa]
16 Hb_004060_030 0.1788655497 - - PREDICTED: primase homolog protein [Jatropha curcas]
17 Hb_000608_180 0.1817753327 - - PREDICTED: putative 4-hydroxy-4-methyl-2-oxoglutarate aldolase 2 [Tarenaya hassleriana]
18 Hb_006846_140 0.1824755513 - - conserved hypothetical protein [Ricinus communis]
19 Hb_137403_010 0.1825144051 - - PREDICTED: actin-related protein 9 [Jatropha curcas]
20 Hb_002783_060 0.1832339468 - - PREDICTED: uncharacterized protein LOC105635325 [Jatropha curcas]

Gene co-expression network

sample Hb_000161_120 Hb_000161_120 Hb_000996_170 Hb_000996_170 Hb_000161_120--Hb_000996_170 Hb_136731_010 Hb_136731_010 Hb_000161_120--Hb_136731_010 Hb_000176_120 Hb_000176_120 Hb_000161_120--Hb_000176_120 Hb_150360_010 Hb_150360_010 Hb_000161_120--Hb_150360_010 Hb_005054_070 Hb_005054_070 Hb_000161_120--Hb_005054_070 Hb_012052_010 Hb_012052_010 Hb_000161_120--Hb_012052_010 Hb_000608_180 Hb_000608_180 Hb_000996_170--Hb_000608_180 Hb_000996_170--Hb_150360_010 Hb_012305_040 Hb_012305_040 Hb_000996_170--Hb_012305_040 Hb_000416_070 Hb_000416_070 Hb_000996_170--Hb_000416_070 Hb_006487_050 Hb_006487_050 Hb_000996_170--Hb_006487_050 Hb_001377_180 Hb_001377_180 Hb_136731_010--Hb_001377_180 Hb_136731_010--Hb_005054_070 Hb_000155_180 Hb_000155_180 Hb_136731_010--Hb_000155_180 Hb_000812_040 Hb_000812_040 Hb_136731_010--Hb_000812_040 Hb_006502_080 Hb_006502_080 Hb_136731_010--Hb_006502_080 Hb_005367_010 Hb_005367_010 Hb_136731_010--Hb_005367_010 Hb_000176_120--Hb_005054_070 Hb_006487_060 Hb_006487_060 Hb_000176_120--Hb_006487_060 Hb_152554_010 Hb_152554_010 Hb_000176_120--Hb_152554_010 Hb_000001_040 Hb_000001_040 Hb_000176_120--Hb_000001_040 Hb_010504_030 Hb_010504_030 Hb_000176_120--Hb_010504_030 Hb_000176_120--Hb_136731_010 Hb_003656_140 Hb_003656_140 Hb_150360_010--Hb_003656_140 Hb_137403_010 Hb_137403_010 Hb_150360_010--Hb_137403_010 Hb_041392_010 Hb_041392_010 Hb_150360_010--Hb_041392_010 Hb_004934_070 Hb_004934_070 Hb_150360_010--Hb_004934_070 Hb_000183_040 Hb_000183_040 Hb_150360_010--Hb_000183_040 Hb_002374_020 Hb_002374_020 Hb_150360_010--Hb_002374_020 Hb_032496_030 Hb_032496_030 Hb_005054_070--Hb_032496_030 Hb_005054_070--Hb_000001_040 Hb_004241_040 Hb_004241_040 Hb_005054_070--Hb_004241_040 Hb_144898_010 Hb_144898_010 Hb_005054_070--Hb_144898_010 Hb_027472_030 Hb_027472_030 Hb_012052_010--Hb_027472_030 Hb_000007_460 Hb_000007_460 Hb_012052_010--Hb_000007_460 Hb_033363_070 Hb_033363_070 Hb_012052_010--Hb_033363_070 Hb_003581_010 Hb_003581_010 Hb_012052_010--Hb_003581_010 Hb_012052_010--Hb_005054_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
3.79463 1.77727 3.01893 8.17901 4.99606 26.0489
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.5274 4.50727 1.32918 2.62326 3.59296

CAGE analysis