Hb_000161_130

Information

Type -
Description -
Location Contig161: 146967-150415
Sequence    

Annotation

kegg
ID rcu:RCOM_1374380
description Nitrogen fixation protein nifU, putative
nr
ID XP_012066647.1
description PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
swissprot
ID Q93W20
description NifU-like protein 2, chloroplastic OS=Arabidopsis thaliana GN=NIFU2 PE=1 SV=1
trembl
ID A0A067LEA0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00216 PE=4 SV=1
Gene Ontology
ID GO:0005198
description nifu-like protein chloroplastic

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14426: 148456-148723 , PASA_asmbl_14427: 146800-150275 , PASA_asmbl_14428: 146908-150409
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_130 0.0 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
2 Hb_000310_020 0.062211096 - - hypothetical protein JCGZ_20797 [Jatropha curcas]
3 Hb_000505_130 0.0765434274 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
4 Hb_000221_190 0.0781162071 - - PREDICTED: 14-3-3-like protein [Jatropha curcas]
5 Hb_017987_050 0.0817279976 - - PREDICTED: branched-chain-amino-acid aminotransferase 5, chloroplastic-like [Jatropha curcas]
6 Hb_000847_060 0.0889361488 - - hypothetical protein [Jatropha curcas]
7 Hb_004324_090 0.089277155 - - PREDICTED: uncharacterized protein LOC105648352 isoform X1 [Jatropha curcas]
8 Hb_003669_020 0.0895190965 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
9 Hb_000729_030 0.0907879272 - - PREDICTED: dentin sialophosphoprotein [Jatropha curcas]
10 Hb_000001_060 0.0926125595 - - PREDICTED: N(6)-adenine-specific DNA methyltransferase 2 [Jatropha curcas]
11 Hb_000856_010 0.0936350866 - - PREDICTED: uncharacterized protein LOC105640466 [Jatropha curcas]
12 Hb_003124_150 0.093779019 transcription factor TF Family: C2C2-GATA PREDICTED: GATA transcription factor 28-like [Jatropha curcas]
13 Hb_158445_010 0.0961575697 - - PREDICTED: cysteine protease ATG4-like isoform X1 [Jatropha curcas]
14 Hb_012022_040 0.0977718589 - - Protein SIS1, putative [Ricinus communis]
15 Hb_000155_160 0.0982269858 - - hypothetical protein POPTR_0011s05880g [Populus trichocarpa]
16 Hb_005162_090 0.0989755913 - - PREDICTED: uncharacterized protein LOC105648425 [Jatropha curcas]
17 Hb_000327_230 0.099306369 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
18 Hb_139294_010 0.0993885956 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
19 Hb_001766_060 0.1001058134 - - conserved hypothetical protein [Ricinus communis]
20 Hb_003502_060 0.1009806567 - - PREDICTED: alpha-1,3/1,6-mannosyltransferase ALG2 [Jatropha curcas]

Gene co-expression network

sample Hb_000161_130 Hb_000161_130 Hb_000310_020 Hb_000310_020 Hb_000161_130--Hb_000310_020 Hb_000505_130 Hb_000505_130 Hb_000161_130--Hb_000505_130 Hb_000221_190 Hb_000221_190 Hb_000161_130--Hb_000221_190 Hb_017987_050 Hb_017987_050 Hb_000161_130--Hb_017987_050 Hb_000847_060 Hb_000847_060 Hb_000161_130--Hb_000847_060 Hb_004324_090 Hb_004324_090 Hb_000161_130--Hb_004324_090 Hb_000310_020--Hb_000505_130 Hb_000310_020--Hb_000221_190 Hb_006615_240 Hb_006615_240 Hb_000310_020--Hb_006615_240 Hb_000310_020--Hb_004324_090 Hb_003124_150 Hb_003124_150 Hb_000310_020--Hb_003124_150 Hb_001931_010 Hb_001931_010 Hb_000505_130--Hb_001931_010 Hb_000505_130--Hb_000221_190 Hb_044653_040 Hb_044653_040 Hb_000505_130--Hb_044653_040 Hb_000505_130--Hb_003124_150 Hb_006326_040 Hb_006326_040 Hb_000505_130--Hb_006326_040 Hb_003582_060 Hb_003582_060 Hb_000221_190--Hb_003582_060 Hb_012022_040 Hb_012022_040 Hb_000221_190--Hb_012022_040 Hb_000221_190--Hb_006615_240 Hb_001278_100 Hb_001278_100 Hb_000221_190--Hb_001278_100 Hb_000099_150 Hb_000099_150 Hb_017987_050--Hb_000099_150 Hb_000327_230 Hb_000327_230 Hb_017987_050--Hb_000327_230 Hb_139294_010 Hb_139294_010 Hb_017987_050--Hb_139294_010 Hb_017987_050--Hb_004324_090 Hb_017987_050--Hb_000310_020 Hb_001728_040 Hb_001728_040 Hb_000847_060--Hb_001728_040 Hb_000155_160 Hb_000155_160 Hb_000847_060--Hb_000155_160 Hb_002239_050 Hb_002239_050 Hb_000847_060--Hb_002239_050 Hb_000419_020 Hb_000419_020 Hb_000847_060--Hb_000419_020 Hb_007894_060 Hb_007894_060 Hb_000847_060--Hb_007894_060 Hb_158445_010 Hb_158445_010 Hb_004324_090--Hb_158445_010 Hb_163256_020 Hb_163256_020 Hb_004324_090--Hb_163256_020 Hb_000069_420 Hb_000069_420 Hb_004324_090--Hb_000069_420 Hb_004324_090--Hb_006615_240 Hb_000856_010 Hb_000856_010 Hb_004324_090--Hb_000856_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.30809 7.26661 6.39586 7.40463 2.51436 4.41024
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.98774 13.037 5.96846 4.43114 7.10896

CAGE analysis