Hb_000161_250

Information

Type transcription factor
Description TF Family: Tify
Location Contig161: 266533-269646
Sequence    

Annotation

kegg
ID rcu:RCOM_0759650
description hypothetical protein
nr
ID XP_002526460.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q9M246
description Protein TIFY 3A OS=Arabidopsis thaliana GN=TIFY3A PE=1 SV=1
trembl
ID B9SKE1
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0759650 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000161_250 0.0 transcription factor TF Family: Tify conserved hypothetical protein [Ricinus communis]
2 Hb_000076_200 0.09594581 - - conserved hypothetical protein [Ricinus communis]
3 Hb_004037_010 0.1169029957 - - PREDICTED: uncharacterized protein LOC105632369 [Jatropha curcas]
4 Hb_000116_550 0.1177588111 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000200_180 0.1198855971 - - -
6 Hb_002521_010 0.1205877541 - - cinnamate 4-hydroxylase, putative [Ricinus communis]
7 Hb_144783_010 0.1210798677 - - glutathione s-transferase, putative [Ricinus communis]
8 Hb_000907_190 0.1322366586 - - PREDICTED: uncharacterized protein At4g15970-like [Jatropha curcas]
9 Hb_009545_040 0.1325672647 - - conserved hypothetical protein [Ricinus communis]
10 Hb_003968_020 0.1328625396 - - PREDICTED: limonoid UDP-glucosyltransferase-like [Glycine max]
11 Hb_006153_190 0.1411202883 - - PREDICTED: 14 kDa proline-rich protein DC2.15-like [Gossypium raimondii]
12 Hb_000120_440 0.1447647809 - - conserved hypothetical protein [Ricinus communis]
13 Hb_002475_070 0.1468989343 - - hypothetical protein POPTR_0017s02440g, partial [Populus trichocarpa]
14 Hb_007532_050 0.1473377458 - - 9-cis-epoxycarotenoid dioxygenase, putative [Ricinus communis]
15 Hb_011486_030 0.1473996427 - - branched-chain amino acid aminotransferase, putative [Ricinus communis]
16 Hb_000005_270 0.1483868275 - - Xyloglucan endotransglucosylase/hydrolase protein 2 precursor, putative [Ricinus communis]
17 Hb_000301_030 0.149093624 - - PREDICTED: pectate lyase-like [Jatropha curcas]
18 Hb_000021_090 0.1507167964 - - -
19 Hb_006620_040 0.1508873097 - - PREDICTED: probable 6-phosphogluconolactonase 1 [Jatropha curcas]
20 Hb_001165_040 0.1515235775 - - hypothetical protein POPTR_0009s10120g [Populus trichocarpa]

Gene co-expression network

sample Hb_000161_250 Hb_000161_250 Hb_000076_200 Hb_000076_200 Hb_000161_250--Hb_000076_200 Hb_004037_010 Hb_004037_010 Hb_000161_250--Hb_004037_010 Hb_000116_550 Hb_000116_550 Hb_000161_250--Hb_000116_550 Hb_000200_180 Hb_000200_180 Hb_000161_250--Hb_000200_180 Hb_002521_010 Hb_002521_010 Hb_000161_250--Hb_002521_010 Hb_144783_010 Hb_144783_010 Hb_000161_250--Hb_144783_010 Hb_003968_020 Hb_003968_020 Hb_000076_200--Hb_003968_020 Hb_007532_050 Hb_007532_050 Hb_000076_200--Hb_007532_050 Hb_000076_200--Hb_004037_010 Hb_005356_010 Hb_005356_010 Hb_000076_200--Hb_005356_010 Hb_007527_020 Hb_007527_020 Hb_000076_200--Hb_007527_020 Hb_009545_040 Hb_009545_040 Hb_004037_010--Hb_009545_040 Hb_000120_440 Hb_000120_440 Hb_004037_010--Hb_000120_440 Hb_000021_090 Hb_000021_090 Hb_004037_010--Hb_000021_090 Hb_025490_030 Hb_025490_030 Hb_004037_010--Hb_025490_030 Hb_001165_040 Hb_001165_040 Hb_004037_010--Hb_001165_040 Hb_000116_550--Hb_000076_200 Hb_000497_120 Hb_000497_120 Hb_000116_550--Hb_000497_120 Hb_000116_550--Hb_144783_010 Hb_000648_120 Hb_000648_120 Hb_000116_550--Hb_000648_120 Hb_000907_190 Hb_000907_190 Hb_000116_550--Hb_000907_190 Hb_000200_180--Hb_002521_010 Hb_124247_030 Hb_124247_030 Hb_000200_180--Hb_124247_030 Hb_000200_180--Hb_144783_010 Hb_006153_190 Hb_006153_190 Hb_000200_180--Hb_006153_190 Hb_000200_180--Hb_004037_010 Hb_126535_010 Hb_126535_010 Hb_000200_180--Hb_126535_010 Hb_028008_010 Hb_028008_010 Hb_002521_010--Hb_028008_010 Hb_002521_010--Hb_006153_190 Hb_002521_010--Hb_000021_090 Hb_002521_010--Hb_144783_010 Hb_000513_100 Hb_000513_100 Hb_002521_010--Hb_000513_100 Hb_002475_070 Hb_002475_070 Hb_144783_010--Hb_002475_070 Hb_004316_130 Hb_004316_130 Hb_144783_010--Hb_004316_130 Hb_000297_180 Hb_000297_180 Hb_144783_010--Hb_000297_180 Hb_003893_100 Hb_003893_100 Hb_144783_010--Hb_003893_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0602423 0 0.312066 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.18715 0.0742252

CAGE analysis