Hb_000162_020

Information

Type -
Description -
Location Contig162: 20268-23801
Sequence    

Annotation

kegg
ID rcu:RCOM_0739500
description protein translocase, putative
nr
ID XP_002528280.1
description protein translocase, putative [Ricinus communis]
swissprot
ID Q9SLF3
description Translocase of chloroplast 132, chloroplastic OS=Arabidopsis thaliana GN=TOC132 PE=1 SV=1
trembl
ID B9SQL1
description Protein translocase, putative OS=Ricinus communis GN=RCOM_0739500 PE=4 SV=1
Gene Ontology
ID GO:0005525
description translocase of chloroplast chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14567: 18703-23771 , PASA_asmbl_14568: 19981-23771
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_020 0.0 - - protein translocase, putative [Ricinus communis]
2 Hb_002762_130 0.0760948141 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
3 Hb_003106_030 0.1007919637 - - PREDICTED: uncharacterized protein DDB_G0271670 [Jatropha curcas]
4 Hb_003994_100 0.1049848828 transcription factor TF Family: PHD PREDICTED: histone acetyltransferase HAC1 isoform X1 [Jatropha curcas]
5 Hb_000061_510 0.1055593147 - - hypothetical protein JCGZ_11686 [Jatropha curcas]
6 Hb_000406_020 0.1059123309 - - -
7 Hb_005214_150 0.1081748984 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105636019 [Jatropha curcas]
8 Hb_011671_230 0.1097771029 - - conserved hypothetical protein [Ricinus communis]
9 Hb_018133_050 0.1122755565 - - PREDICTED: protein MODIFIER OF SNC1 1 [Jatropha curcas]
10 Hb_000080_170 0.1129436275 transcription factor TF Family: RWP-RK transcription factor, putative [Ricinus communis]
11 Hb_001780_090 0.1142374756 - - PREDICTED: uncharacterized protein LOC105631099 isoform X1 [Jatropha curcas]
12 Hb_003604_030 0.1156523852 - - hypothetical protein MIMGU_mgv1a025764mg, partial [Erythranthe guttata]
13 Hb_000836_020 0.1179659864 transcription factor TF Family: SNF2 Chromo domain protein, putative [Ricinus communis]
14 Hb_003604_040 0.1181652329 - - Serine/threonine-protein kinase sepA [Morus notabilis]
15 Hb_000189_100 0.1209763091 - - PREDICTED: mediator of RNA polymerase II transcription subunit 14 [Jatropha curcas]
16 Hb_011947_050 0.1223028057 - - E3 ubiquitin protein ligase upl2, putative [Ricinus communis]
17 Hb_005701_070 0.1234852007 - - PREDICTED: uncharacterized TPR repeat-containing protein At1g05150-like [Jatropha curcas]
18 Hb_006663_040 0.1238157096 - - PREDICTED: DDB1- and CUL4-associated factor homolog 1 isoform X2 [Jatropha curcas]
19 Hb_001401_060 0.1242505347 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
20 Hb_001493_040 0.1243213367 - - PREDICTED: FACT complex subunit SPT16-like [Jatropha curcas]

Gene co-expression network

sample Hb_000162_020 Hb_000162_020 Hb_002762_130 Hb_002762_130 Hb_000162_020--Hb_002762_130 Hb_003106_030 Hb_003106_030 Hb_000162_020--Hb_003106_030 Hb_003994_100 Hb_003994_100 Hb_000162_020--Hb_003994_100 Hb_000061_510 Hb_000061_510 Hb_000162_020--Hb_000061_510 Hb_000406_020 Hb_000406_020 Hb_000162_020--Hb_000406_020 Hb_005214_150 Hb_005214_150 Hb_000162_020--Hb_005214_150 Hb_018133_050 Hb_018133_050 Hb_002762_130--Hb_018133_050 Hb_034243_020 Hb_034243_020 Hb_002762_130--Hb_034243_020 Hb_000997_030 Hb_000997_030 Hb_002762_130--Hb_000997_030 Hb_133047_010 Hb_133047_010 Hb_002762_130--Hb_133047_010 Hb_001493_040 Hb_001493_040 Hb_002762_130--Hb_001493_040 Hb_005104_010 Hb_005104_010 Hb_003106_030--Hb_005104_010 Hb_003106_030--Hb_002762_130 Hb_000345_150 Hb_000345_150 Hb_003106_030--Hb_000345_150 Hb_000836_020 Hb_000836_020 Hb_003106_030--Hb_000836_020 Hb_010712_040 Hb_010712_040 Hb_003106_030--Hb_010712_040 Hb_002784_010 Hb_002784_010 Hb_003106_030--Hb_002784_010 Hb_000080_170 Hb_000080_170 Hb_003994_100--Hb_000080_170 Hb_005539_090 Hb_005539_090 Hb_003994_100--Hb_005539_090 Hb_003994_100--Hb_000345_150 Hb_000012_140 Hb_000012_140 Hb_003994_100--Hb_000012_140 Hb_006663_040 Hb_006663_040 Hb_003994_100--Hb_006663_040 Hb_052764_060 Hb_052764_060 Hb_003994_100--Hb_052764_060 Hb_002095_070 Hb_002095_070 Hb_000061_510--Hb_002095_070 Hb_000189_100 Hb_000189_100 Hb_000061_510--Hb_000189_100 Hb_001027_010 Hb_001027_010 Hb_000061_510--Hb_001027_010 Hb_000206_040 Hb_000206_040 Hb_000061_510--Hb_000206_040 Hb_003211_040 Hb_003211_040 Hb_000061_510--Hb_003211_040 Hb_000061_510--Hb_000836_020 Hb_001235_230 Hb_001235_230 Hb_000406_020--Hb_001235_230 Hb_003119_080 Hb_003119_080 Hb_000406_020--Hb_003119_080 Hb_000086_690 Hb_000086_690 Hb_000406_020--Hb_000086_690 Hb_000960_100 Hb_000960_100 Hb_000406_020--Hb_000960_100 Hb_002784_110 Hb_002784_110 Hb_000406_020--Hb_002784_110 Hb_000446_120 Hb_000446_120 Hb_000406_020--Hb_000446_120 Hb_005214_150--Hb_002784_010 Hb_011671_230 Hb_011671_230 Hb_005214_150--Hb_011671_230 Hb_001959_270 Hb_001959_270 Hb_005214_150--Hb_001959_270 Hb_000327_080 Hb_000327_080 Hb_005214_150--Hb_000327_080 Hb_000703_130 Hb_000703_130 Hb_005214_150--Hb_000703_130 Hb_155159_010 Hb_155159_010 Hb_005214_150--Hb_155159_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
67.9242 131.032 26.4046 29.5674 84.9971 119.565
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
20.3632 11.7644 30.7132 70.7434 83.1255

CAGE analysis