Hb_000162_090

Information

Type -
Description -
Location Contig162: 122582-129461
Sequence    

Annotation

kegg
ID pop:POPTR_0004s17790g
description POPTRDRAFT_195974; hypothetical protein
nr
ID XP_012092571.1
description PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
swissprot
ID Q6DC64
description Methyltransferase-like protein 16 OS=Danio rerio GN=mettl16 PE=2 SV=1
trembl
ID A0A067JLM5
description Methyltransferase-like protein OS=Jatropha curcas GN=JCGZ_06368 PE=3 SV=1
Gene Ontology
ID GO:0003676
description methyltransferase-like protein 16 isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14574: 128155-129638 , PASA_asmbl_14575: 127939-130106
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_090 0.0 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
2 Hb_001511_020 0.0659109132 - - PREDICTED: peroxisome biogenesis protein 22 [Jatropha curcas]
3 Hb_003642_060 0.0670997843 - - hypothetical protein RCOM_1189860 [Ricinus communis]
4 Hb_000803_150 0.0715788753 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
5 Hb_000165_030 0.0732418658 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
6 Hb_000089_220 0.0828295295 - - PREDICTED: protein FAM133-like [Populus euphratica]
7 Hb_001913_010 0.0863858737 - - phosphatidylinositol n-acetylglucosaminyltransferase subunit p, putative [Ricinus communis]
8 Hb_000905_190 0.0874900776 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
9 Hb_001214_130 0.0879978143 - - PREDICTED: uncharacterized protein LOC105646578 [Jatropha curcas]
10 Hb_000749_150 0.0899287972 - - -
11 Hb_003001_140 0.0905036304 - - PREDICTED: RPM1-interacting protein 4 [Jatropha curcas]
12 Hb_000943_070 0.0922894466 - - PREDICTED: uncharacterized protein LOC105635592 isoform X1 [Jatropha curcas]
13 Hb_001823_100 0.0939943544 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
14 Hb_168707_030 0.095034858 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 12 homolog A [Populus euphratica]
15 Hb_109842_010 0.0955176758 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
16 Hb_000188_100 0.0957580581 - - PREDICTED: protein YIPF5 homolog [Jatropha curcas]
17 Hb_001898_230 0.0958430484 - - PREDICTED: KH domain-containing protein At1g09660/At1g09670 isoform X2 [Jatropha curcas]
18 Hb_005307_030 0.0960275495 - - hypothetical protein POPTR_0006s04640g [Populus trichocarpa]
19 Hb_001274_030 0.09793711 - - PREDICTED: uncharacterized protein LOC105628035 [Jatropha curcas]
20 Hb_003609_040 0.0979403442 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_090 Hb_000162_090 Hb_001511_020 Hb_001511_020 Hb_000162_090--Hb_001511_020 Hb_003642_060 Hb_003642_060 Hb_000162_090--Hb_003642_060 Hb_000803_150 Hb_000803_150 Hb_000162_090--Hb_000803_150 Hb_000165_030 Hb_000165_030 Hb_000162_090--Hb_000165_030 Hb_000089_220 Hb_000089_220 Hb_000162_090--Hb_000089_220 Hb_001913_010 Hb_001913_010 Hb_000162_090--Hb_001913_010 Hb_001439_150 Hb_001439_150 Hb_001511_020--Hb_001439_150 Hb_001301_160 Hb_001301_160 Hb_001511_020--Hb_001301_160 Hb_001623_420 Hb_001623_420 Hb_001511_020--Hb_001623_420 Hb_001511_020--Hb_003642_060 Hb_002685_140 Hb_002685_140 Hb_001511_020--Hb_002685_140 Hb_001214_130 Hb_001214_130 Hb_003642_060--Hb_001214_130 Hb_028639_060 Hb_028639_060 Hb_003642_060--Hb_028639_060 Hb_168707_030 Hb_168707_030 Hb_003642_060--Hb_168707_030 Hb_000905_190 Hb_000905_190 Hb_003642_060--Hb_000905_190 Hb_003642_060--Hb_000089_220 Hb_004195_160 Hb_004195_160 Hb_003642_060--Hb_004195_160 Hb_000803_150--Hb_001214_130 Hb_000749_150 Hb_000749_150 Hb_000803_150--Hb_000749_150 Hb_041091_010 Hb_041091_010 Hb_000803_150--Hb_041091_010 Hb_000803_150--Hb_003642_060 Hb_185467_020 Hb_185467_020 Hb_000803_150--Hb_185467_020 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_003406_010 Hb_003406_010 Hb_000089_220--Hb_003406_010 Hb_006185_050 Hb_006185_050 Hb_000089_220--Hb_006185_050 Hb_003001_140 Hb_003001_140 Hb_000089_220--Hb_003001_140 Hb_003010_030 Hb_003010_030 Hb_000089_220--Hb_003010_030 Hb_000926_280 Hb_000926_280 Hb_000089_220--Hb_000926_280 Hb_001913_010--Hb_001511_020 Hb_002399_010 Hb_002399_010 Hb_001913_010--Hb_002399_010 Hb_001274_030 Hb_001274_030 Hb_001913_010--Hb_001274_030 Hb_004109_200 Hb_004109_200 Hb_001913_010--Hb_004109_200 Hb_010381_070 Hb_010381_070 Hb_001913_010--Hb_010381_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
41.1007 20.0188 16.2981 9.41035 35.799 57.3753
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
28.1048 34.0157 35.4443 7.55598 9.7721

CAGE analysis