Hb_000162_100

Information

Type -
Description -
Location Contig162: 129573-134499
Sequence    

Annotation

kegg
ID pmum:103326735
description uncharacterized LOC103326735
nr
ID XP_012078093.1
description PREDICTED: uncharacterized protein LOC105638832 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID W9S6E9
description Uncharacterized protein OS=Morus notabilis GN=L484_006992 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14576: 134251-134465
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_100 0.0 - - PREDICTED: uncharacterized protein LOC105638832 [Jatropha curcas]
2 Hb_000608_240 0.1371882175 - - eIF4-gamma/eIF5/eIF2-epsilon domain-containing family protein [Populus trichocarpa]
3 Hb_074979_010 0.1386607504 - - hypothetical protein AALP_AA2G213100 [Arabis alpina]
4 Hb_007881_030 0.1392120708 - - Protein YME1, putative [Ricinus communis]
5 Hb_006332_010 0.142437404 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At5g10290 isoform X1 [Vitis vinifera]
6 Hb_069738_010 0.1457798518 - - PREDICTED: extra-large guanine nucleotide-binding protein 1 [Jatropha curcas]
7 Hb_000041_020 0.1464622274 - - hypothetical protein POPTR_0009s11640g [Populus trichocarpa]
8 Hb_011161_010 0.14818595 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g35370 isoform X1 [Jatropha curcas]
9 Hb_076875_020 0.1547512094 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
10 Hb_027450_010 0.1583827244 - - PREDICTED: pentatricopeptide repeat-containing protein At3g49170, chloroplastic [Populus euphratica]
11 Hb_034585_060 0.1586307522 - - PREDICTED: pentatricopeptide repeat-containing protein At3g50420 [Jatropha curcas]
12 Hb_003488_030 0.1609853896 - - PREDICTED: protein CPR-5 [Jatropha curcas]
13 Hb_000173_340 0.1614378284 - - hypothetical protein JCGZ_02075 [Jatropha curcas]
14 Hb_004767_100 0.1620435341 - - eukaryotic translation initiation factor 2c, putative [Ricinus communis]
15 Hb_008643_040 0.163051665 - - PREDICTED: jacalin-related lectin 3-like [Jatropha curcas]
16 Hb_001232_160 0.1633066831 - - PREDICTED: protein SYS1 homolog [Gossypium raimondii]
17 Hb_004447_060 0.1639923735 - - PREDICTED: uncharacterized protein LOC105636329 isoform X2 [Jatropha curcas]
18 Hb_003633_040 0.1649599122 - - hypothetical protein B456_008G146200 [Gossypium raimondii]
19 Hb_008085_010 0.1655435905 - - PREDICTED: pentatricopeptide repeat-containing protein At4g26680, mitochondrial [Jatropha curcas]
20 Hb_000365_390 0.1671261274 - - PREDICTED: KH domain-containing protein At2g38610 [Jatropha curcas]

Gene co-expression network

sample Hb_000162_100 Hb_000162_100 Hb_000608_240 Hb_000608_240 Hb_000162_100--Hb_000608_240 Hb_074979_010 Hb_074979_010 Hb_000162_100--Hb_074979_010 Hb_007881_030 Hb_007881_030 Hb_000162_100--Hb_007881_030 Hb_006332_010 Hb_006332_010 Hb_000162_100--Hb_006332_010 Hb_069738_010 Hb_069738_010 Hb_000162_100--Hb_069738_010 Hb_000041_020 Hb_000041_020 Hb_000162_100--Hb_000041_020 Hb_004767_100 Hb_004767_100 Hb_000608_240--Hb_004767_100 Hb_000608_240--Hb_006332_010 Hb_005170_040 Hb_005170_040 Hb_000608_240--Hb_005170_040 Hb_000191_150 Hb_000191_150 Hb_000608_240--Hb_000191_150 Hb_000009_240 Hb_000009_240 Hb_000608_240--Hb_000009_240 Hb_004032_150 Hb_004032_150 Hb_000608_240--Hb_004032_150 Hb_076875_020 Hb_076875_020 Hb_074979_010--Hb_076875_020 Hb_000108_140 Hb_000108_140 Hb_074979_010--Hb_000108_140 Hb_003633_040 Hb_003633_040 Hb_074979_010--Hb_003633_040 Hb_067776_010 Hb_067776_010 Hb_074979_010--Hb_067776_010 Hb_001386_140 Hb_001386_140 Hb_074979_010--Hb_001386_140 Hb_032225_010 Hb_032225_010 Hb_007881_030--Hb_032225_010 Hb_003777_320 Hb_003777_320 Hb_007881_030--Hb_003777_320 Hb_144528_010 Hb_144528_010 Hb_007881_030--Hb_144528_010 Hb_000635_250 Hb_000635_250 Hb_007881_030--Hb_000635_250 Hb_001538_130 Hb_001538_130 Hb_007881_030--Hb_001538_130 Hb_000092_170 Hb_000092_170 Hb_007881_030--Hb_000092_170 Hb_004447_060 Hb_004447_060 Hb_006332_010--Hb_004447_060 Hb_007163_090 Hb_007163_090 Hb_006332_010--Hb_007163_090 Hb_148644_010 Hb_148644_010 Hb_006332_010--Hb_148644_010 Hb_002811_360 Hb_002811_360 Hb_006332_010--Hb_002811_360 Hb_006332_010--Hb_004767_100 Hb_001301_200 Hb_001301_200 Hb_006332_010--Hb_001301_200 Hb_000192_080 Hb_000192_080 Hb_069738_010--Hb_000192_080 Hb_012322_010 Hb_012322_010 Hb_069738_010--Hb_012322_010 Hb_000009_560 Hb_000009_560 Hb_069738_010--Hb_000009_560 Hb_000185_040 Hb_000185_040 Hb_069738_010--Hb_000185_040 Hb_000318_290 Hb_000318_290 Hb_069738_010--Hb_000318_290 Hb_010964_040 Hb_010964_040 Hb_069738_010--Hb_010964_040 Hb_001437_180 Hb_001437_180 Hb_000041_020--Hb_001437_180 Hb_002636_050 Hb_002636_050 Hb_000041_020--Hb_002636_050 Hb_001484_120 Hb_001484_120 Hb_000041_020--Hb_001484_120 Hb_001771_130 Hb_001771_130 Hb_000041_020--Hb_001771_130 Hb_000009_210 Hb_000009_210 Hb_000041_020--Hb_000009_210 Hb_027450_010 Hb_027450_010 Hb_000041_020--Hb_027450_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.25086 1.48661 0.378973 1.29267 0.887056 4.29225
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.605853 2.22202 1.80434 1.13905 0.767883

CAGE analysis