Hb_000162_130

Information

Type -
Description -
Location Contig162: 160216-162183
Sequence    

Annotation

kegg
ID rcu:RCOM_0739970
description hypothetical protein
nr
ID XP_002528287.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID Q59MN0
description Vacuolar protein 8 OS=Candida albicans (strain SC5314 / ATCC MYA-2876) GN=VAC8 PE=3 SV=3
trembl
ID B9SQL8
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0739970 PE=4 SV=1
Gene Ontology
ID GO:0005634
description armadillo repeat only 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_130 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_002007_070 0.1139388294 - - PREDICTED: serrate RNA effector molecule homolog [Jatropha curcas]
3 Hb_155946_030 0.1192191266 - - PREDICTED: BTB/POZ domain-containing protein At5g41330 [Jatropha curcas]
4 Hb_001579_070 0.1400432046 - - PREDICTED: uncharacterized protein LOC105644596 [Jatropha curcas]
5 Hb_000959_020 0.1431189339 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
6 Hb_000680_180 0.1463346515 - - hypothetical protein JCGZ_15248 [Jatropha curcas]
7 Hb_000003_240 0.1499110335 - - conserved hypothetical protein [Ricinus communis]
8 Hb_173271_010 0.1501330178 - - Disease resistance protein RPP13, putative [Ricinus communis]
9 Hb_002151_130 0.156928564 - - 12-oxophytodienoate reductase [Hevea brasiliensis]
10 Hb_001775_090 0.1614731125 - - hypothetical protein JCGZ_11262 [Jatropha curcas]
11 Hb_001519_060 0.1656315399 - - PREDICTED: glutamyl-tRNA reductase 1, chloroplastic-like [Jatropha curcas]
12 Hb_004970_070 0.1656553992 - - hypothetical protein POPTR_0002s12620g [Populus trichocarpa]
13 Hb_001007_090 0.1700529047 - - PREDICTED: protein EARLY RESPONSIVE TO DEHYDRATION 15 [Jatropha curcas]
14 Hb_002217_190 0.1738119702 - - invertase [Hevea brasiliensis]
15 Hb_004586_130 0.1752016473 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000134_030 0.1775803962 - - PREDICTED: sister chromatid cohesion 1 protein 3-like [Jatropha curcas]
17 Hb_124677_020 0.1781735928 - - hypothetical protein CARUB_v10021660mg, partial [Capsella rubella]
18 Hb_006018_050 0.1791090553 - - PREDICTED: probable protein phosphatase 2C 63 [Jatropha curcas]
19 Hb_015026_040 0.1820807145 - - PREDICTED: vacuolar protein sorting-associated protein 28 homolog 2 [Jatropha curcas]
20 Hb_002311_150 0.1828860321 - - Protein COBRA precursor, putative [Ricinus communis]

Gene co-expression network

sample Hb_000162_130 Hb_000162_130 Hb_002007_070 Hb_002007_070 Hb_000162_130--Hb_002007_070 Hb_155946_030 Hb_155946_030 Hb_000162_130--Hb_155946_030 Hb_001579_070 Hb_001579_070 Hb_000162_130--Hb_001579_070 Hb_000959_020 Hb_000959_020 Hb_000162_130--Hb_000959_020 Hb_000680_180 Hb_000680_180 Hb_000162_130--Hb_000680_180 Hb_000003_240 Hb_000003_240 Hb_000162_130--Hb_000003_240 Hb_002007_070--Hb_000680_180 Hb_010126_030 Hb_010126_030 Hb_002007_070--Hb_010126_030 Hb_000256_180 Hb_000256_180 Hb_002007_070--Hb_000256_180 Hb_004612_020 Hb_004612_020 Hb_002007_070--Hb_004612_020 Hb_000984_290 Hb_000984_290 Hb_002007_070--Hb_000984_290 Hb_155946_030--Hb_001579_070 Hb_124677_020 Hb_124677_020 Hb_155946_030--Hb_124677_020 Hb_000260_300 Hb_000260_300 Hb_155946_030--Hb_000260_300 Hb_031108_010 Hb_031108_010 Hb_155946_030--Hb_031108_010 Hb_007894_020 Hb_007894_020 Hb_155946_030--Hb_007894_020 Hb_011930_120 Hb_011930_120 Hb_001579_070--Hb_011930_120 Hb_001579_070--Hb_000003_240 Hb_001519_060 Hb_001519_060 Hb_001579_070--Hb_001519_060 Hb_001579_070--Hb_000680_180 Hb_001579_070--Hb_031108_010 Hb_000959_020--Hb_000680_180 Hb_000959_020--Hb_001519_060 Hb_000959_020--Hb_001579_070 Hb_000959_020--Hb_002007_070 Hb_015026_040 Hb_015026_040 Hb_000959_020--Hb_015026_040 Hb_000680_180--Hb_011930_120 Hb_000680_180--Hb_010126_030 Hb_000283_100 Hb_000283_100 Hb_000680_180--Hb_000283_100 Hb_001989_060 Hb_001989_060 Hb_000680_180--Hb_001989_060 Hb_001242_180 Hb_001242_180 Hb_000003_240--Hb_001242_180 Hb_000003_240--Hb_000680_180 Hb_002876_070 Hb_002876_070 Hb_000003_240--Hb_002876_070 Hb_000003_240--Hb_001519_060 Hb_000003_240--Hb_011930_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0376119 0.582892 0.822176 0.367673 0.00946342 0.0539768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0229762 0.0723128 0.0342669 0.0215803 0.0381875

CAGE analysis