Hb_000162_140

Information

Type transcription factor
Description TF Family: CSD
Location Contig162: 175604-176188
Sequence    

Annotation

kegg
ID cam:101490833
description glycine-rich protein 2-like
nr
ID XP_012081737.1
description PREDICTED: glycine-rich protein 2 [Jatropha curcas]
swissprot
ID O65639
description Cold shock protein 1 OS=Arabidopsis thaliana GN=CSP1 PE=1 SV=1
trembl
ID A0A067K074
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_18783 PE=4 SV=1
Gene Ontology
ID GO:0003677
description glycine-rich protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_140 0.0 transcription factor TF Family: CSD PREDICTED: glycine-rich protein 2 [Jatropha curcas]
2 Hb_005839_110 0.087363377 - - PREDICTED: cytochrome b561 and DOMON domain-containing protein At5g47530-like [Populus euphratica]
3 Hb_003147_050 0.1030937228 - - nucleic acid binding protein, putative [Ricinus communis]
4 Hb_002659_040 0.106584424 - - hydroxysteroid dehydrogenase, putative [Ricinus communis]
5 Hb_001616_060 0.1082910639 - - PREDICTED: DNA-directed RNA polymerase subunit 10-like protein [Jatropha curcas]
6 Hb_003929_120 0.109387234 - - PREDICTED: 50S ribosomal protein L3-2, chloroplastic [Jatropha curcas]
7 Hb_002078_460 0.1094566782 - - -
8 Hb_000424_210 0.111589722 - - PREDICTED: uncharacterized protein LOC105638063 isoform X1 [Jatropha curcas]
9 Hb_001762_060 0.1127710655 - - pantothenate kinase, putative [Ricinus communis]
10 Hb_000196_080 0.1134794474 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
11 Hb_001278_050 0.1137788668 - - PREDICTED: uncharacterized protein LOC105636924 [Jatropha curcas]
12 Hb_001575_020 0.11552203 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000061_300 0.1218736162 - - hypothetical protein JCGZ_11668 [Jatropha curcas]
14 Hb_007382_150 0.1236327486 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
15 Hb_001538_140 0.1306321533 - - PREDICTED: PXMP2/4 family protein 4-like [Jatropha curcas]
16 Hb_000432_050 0.1307434016 - - GTP-binding protein typa/bipa, putative [Ricinus communis]
17 Hb_001427_230 0.1309261405 - - conserved hypothetical protein [Ricinus communis]
18 Hb_005539_240 0.1319123877 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
19 Hb_162275_030 0.1330967751 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
20 Hb_000069_100 0.1333874022 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000162_140 Hb_000162_140 Hb_005839_110 Hb_005839_110 Hb_000162_140--Hb_005839_110 Hb_003147_050 Hb_003147_050 Hb_000162_140--Hb_003147_050 Hb_002659_040 Hb_002659_040 Hb_000162_140--Hb_002659_040 Hb_001616_060 Hb_001616_060 Hb_000162_140--Hb_001616_060 Hb_003929_120 Hb_003929_120 Hb_000162_140--Hb_003929_120 Hb_002078_460 Hb_002078_460 Hb_000162_140--Hb_002078_460 Hb_005839_110--Hb_003147_050 Hb_000061_300 Hb_000061_300 Hb_005839_110--Hb_000061_300 Hb_005839_110--Hb_003929_120 Hb_001575_020 Hb_001575_020 Hb_005839_110--Hb_001575_020 Hb_000432_050 Hb_000432_050 Hb_005839_110--Hb_000432_050 Hb_001538_140 Hb_001538_140 Hb_003147_050--Hb_001538_140 Hb_003147_050--Hb_002078_460 Hb_002290_040 Hb_002290_040 Hb_003147_050--Hb_002290_040 Hb_003147_050--Hb_003929_120 Hb_000424_210 Hb_000424_210 Hb_002659_040--Hb_000424_210 Hb_001762_060 Hb_001762_060 Hb_002659_040--Hb_001762_060 Hb_162275_030 Hb_162275_030 Hb_002659_040--Hb_162275_030 Hb_001427_230 Hb_001427_230 Hb_002659_040--Hb_001427_230 Hb_000398_160 Hb_000398_160 Hb_002659_040--Hb_000398_160 Hb_001616_060--Hb_001575_020 Hb_000069_100 Hb_000069_100 Hb_001616_060--Hb_000069_100 Hb_001616_060--Hb_002078_460 Hb_007382_150 Hb_007382_150 Hb_001616_060--Hb_007382_150 Hb_002097_060 Hb_002097_060 Hb_001616_060--Hb_002097_060 Hb_008289_060 Hb_008289_060 Hb_001616_060--Hb_008289_060 Hb_003929_120--Hb_001575_020 Hb_003929_120--Hb_000069_100 Hb_003929_120--Hb_001616_060 Hb_003929_120--Hb_007382_150 Hb_003938_180 Hb_003938_180 Hb_003929_120--Hb_003938_180 Hb_000224_090 Hb_000224_090 Hb_003929_120--Hb_000224_090 Hb_002028_130 Hb_002028_130 Hb_002078_460--Hb_002028_130 Hb_001278_050 Hb_001278_050 Hb_002078_460--Hb_001278_050 Hb_002078_460--Hb_007382_150 Hb_000865_070 Hb_000865_070 Hb_002078_460--Hb_000865_070 Hb_000032_220 Hb_000032_220 Hb_002078_460--Hb_000032_220
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
59.2186 28.7911 11.3726 23.8697 68.455 78.5521
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
299.106 225.581 306.582 85.8833 52.8935

CAGE analysis