Hb_000162_160

Information

Type -
Description -
Location Contig162: 205294-208938
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13470g
description POPTRDRAFT_649249; auxin influx carrier family protein
nr
ID XP_011046499.1
description PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
swissprot
ID Q8L883
description Auxin transporter-like protein 5 OS=Medicago truncatula GN=LAX5 PE=2 SV=1
trembl
ID A9PAI6
description Auxin influx carrier family protein OS=Populus trichocarpa GN=POPTR_0009s13470g PE=2 SV=1
Gene Ontology
ID GO:0016021
description auxin transporter-like protein 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14580: 207994-208514 , PASA_asmbl_14581: 205137-208874
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_160 0.0 - - PREDICTED: auxin transporter-like protein 5 [Populus euphratica]
2 Hb_001322_220 0.0853926148 - - Major pollen allergen Ory s 1 precursor, putative [Ricinus communis]
3 Hb_000527_020 0.089513211 - - PREDICTED: uncharacterized protein LOC105649490 [Jatropha curcas]
4 Hb_120289_010 0.0896633623 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570 [Jatropha curcas]
5 Hb_001190_030 0.0921170325 - - hypothetical protein VITISV_017115 [Vitis vinifera]
6 Hb_056196_020 0.0936335188 - - PREDICTED: uncharacterized protein LOC105631532 isoform X1 [Jatropha curcas]
7 Hb_022845_010 0.0963061938 - - PREDICTED: protein NRT1/ PTR FAMILY 5.10-like [Jatropha curcas]
8 Hb_006573_310 0.0984274528 - - Tellurite resistance protein tehA, putative [Ricinus communis]
9 Hb_000056_290 0.1047023342 - - conserved hypothetical protein [Ricinus communis]
10 Hb_002790_010 0.1052917642 - - Anthranilate N-benzoyltransferase protein, putative [Ricinus communis]
11 Hb_004774_080 0.105444282 - - conserved hypothetical protein [Ricinus communis]
12 Hb_000138_120 0.1138005897 - - conserved hypothetical protein [Ricinus communis]
13 Hb_000700_020 0.1152518138 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
14 Hb_034498_010 0.1159947322 - - PREDICTED: uncharacterized protein LOC105636842 [Jatropha curcas]
15 Hb_001300_110 0.116900575 - - PREDICTED: bidirectional sugar transporter N3-like [Jatropha curcas]
16 Hb_000243_270 0.1169083216 - - Pectinesterase-2 precursor, putative [Ricinus communis]
17 Hb_007524_020 0.1169143211 - - PREDICTED: probable indole-3-pyruvate monooxygenase YUCCA4 [Jatropha curcas]
18 Hb_064476_010 0.1170242407 - - PREDICTED: beta-Amyrin Synthase 1-like [Sesamum indicum]
19 Hb_000506_060 0.1170250769 - - PREDICTED: LOW QUALITY PROTEIN: subtilisin-like protease [Malus domestica]
20 Hb_003363_100 0.117156874 - - -

Gene co-expression network

sample Hb_000162_160 Hb_000162_160 Hb_001322_220 Hb_001322_220 Hb_000162_160--Hb_001322_220 Hb_000527_020 Hb_000527_020 Hb_000162_160--Hb_000527_020 Hb_120289_010 Hb_120289_010 Hb_000162_160--Hb_120289_010 Hb_001190_030 Hb_001190_030 Hb_000162_160--Hb_001190_030 Hb_056196_020 Hb_056196_020 Hb_000162_160--Hb_056196_020 Hb_022845_010 Hb_022845_010 Hb_000162_160--Hb_022845_010 Hb_001322_220--Hb_001190_030 Hb_001322_220--Hb_022845_010 Hb_000185_190 Hb_000185_190 Hb_001322_220--Hb_000185_190 Hb_015754_010 Hb_015754_010 Hb_001322_220--Hb_015754_010 Hb_001031_130 Hb_001031_130 Hb_001322_220--Hb_001031_130 Hb_002081_110 Hb_002081_110 Hb_001322_220--Hb_002081_110 Hb_000890_140 Hb_000890_140 Hb_000527_020--Hb_000890_140 Hb_005398_050 Hb_005398_050 Hb_000527_020--Hb_005398_050 Hb_128392_010 Hb_128392_010 Hb_000527_020--Hb_128392_010 Hb_021576_050 Hb_021576_050 Hb_000527_020--Hb_021576_050 Hb_001390_040 Hb_001390_040 Hb_000527_020--Hb_001390_040 Hb_006573_310 Hb_006573_310 Hb_000527_020--Hb_006573_310 Hb_000056_290 Hb_000056_290 Hb_120289_010--Hb_000056_290 Hb_120289_010--Hb_022845_010 Hb_000700_020 Hb_000700_020 Hb_120289_010--Hb_000700_020 Hb_001329_050 Hb_001329_050 Hb_120289_010--Hb_001329_050 Hb_120289_010--Hb_001322_220 Hb_001190_030--Hb_022845_010 Hb_002986_150 Hb_002986_150 Hb_001190_030--Hb_002986_150 Hb_001728_090 Hb_001728_090 Hb_001190_030--Hb_001728_090 Hb_003549_110 Hb_003549_110 Hb_001190_030--Hb_003549_110 Hb_004712_120 Hb_004712_120 Hb_001190_030--Hb_004712_120 Hb_004097_030 Hb_004097_030 Hb_056196_020--Hb_004097_030 Hb_005914_100 Hb_005914_100 Hb_056196_020--Hb_005914_100 Hb_002837_120 Hb_002837_120 Hb_056196_020--Hb_002837_120 Hb_004174_030 Hb_004174_030 Hb_056196_020--Hb_004174_030 Hb_001969_030 Hb_001969_030 Hb_056196_020--Hb_001969_030 Hb_003018_210 Hb_003018_210 Hb_056196_020--Hb_003018_210 Hb_000654_060 Hb_000654_060 Hb_022845_010--Hb_000654_060 Hb_152528_010 Hb_152528_010 Hb_022845_010--Hb_152528_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0583929 0.188253 8.35577 5.11972 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0352832 0.092908

CAGE analysis