Hb_000162_260

Information

Type -
Description -
Location Contig162: 375996-382427
Sequence    

Annotation

kegg
ID pop:POPTR_0009s13540g
description POPTRDRAFT_821105; hypothetical protein
nr
ID XP_010266800.1
description PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
swissprot
ID O49605
description Peptidyl-prolyl cis-trans isomerase CYP21-1 OS=Arabidopsis thaliana GN=CYP21-1 PE=2 SV=1
trembl
ID V4U9B7
description Uncharacterized protein OS=Citrus clementina GN=CICLE_v10029236mg PE=3 SV=1
Gene Ontology
ID GO:0005768
description peptidyl-prolyl cis-trans isomerase cyp21-1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14596: 374465-382607
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000162_260 0.0 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP21-1 [Nelumbo nucifera]
2 Hb_000083_170 0.0770548448 - - PREDICTED: DNA-directed RNA polymerase V subunit 7-like [Populus euphratica]
3 Hb_001584_190 0.0887702235 - - clathrin coat adaptor ap3 medium chain, putative [Ricinus communis]
4 Hb_037887_010 0.0899821 - - Charged multivesicular body protein 2a, putative [Ricinus communis]
5 Hb_012653_040 0.0926170479 - - UV-induced protein uvi31, putative [Ricinus communis]
6 Hb_066768_010 0.0993739745 - - PREDICTED: outer envelope pore protein 16-3, chloroplastic/mitochondrial [Jatropha curcas]
7 Hb_000479_190 0.1035516474 - - conserved hypothetical protein [Ricinus communis]
8 Hb_003092_030 0.1056989999 - - PREDICTED: calmodulin-binding receptor-like cytoplasmic kinase 3 [Jatropha curcas]
9 Hb_021238_050 0.1084222012 - - conserved hypothetical protein [Ricinus communis]
10 Hb_000898_050 0.1093473462 - - -
11 Hb_001700_030 0.110211473 transcription factor TF Family: ULT PREDICTED: protein ULTRAPETALA 1-like [Jatropha curcas]
12 Hb_005867_020 0.1115131443 - - PREDICTED: sm-like protein LSM8 [Jatropha curcas]
13 Hb_001205_150 0.1128834881 - - Uncharacterized protein TCM_000403 [Theobroma cacao]
14 Hb_006198_080 0.1141756832 - - hypothetical protein MIMGU_mgv1a013452mg [Erythranthe guttata]
15 Hb_000656_040 0.1147112086 - - PREDICTED: 25.3 kDa vesicle transport protein [Jatropha curcas]
16 Hb_000229_040 0.114792986 - - Secretory carrier membrane protein (SCAMP) family protein isoform 2 [Theobroma cacao]
17 Hb_003502_090 0.1152435715 - - ATP synthase subunit d, putative [Ricinus communis]
18 Hb_001998_230 0.1153637935 - - PREDICTED: coatomer subunit epsilon-1 [Jatropha curcas]
19 Hb_000792_090 0.1153778436 - - 3-beta-hydroxy-delta5-steroid dehydrogenase, putative [Ricinus communis]
20 Hb_004705_100 0.115510607 - - PREDICTED: inactive leucine-rich repeat receptor-like protein kinase CORYNE [Jatropha curcas]

Gene co-expression network

sample Hb_000162_260 Hb_000162_260 Hb_000083_170 Hb_000083_170 Hb_000162_260--Hb_000083_170 Hb_001584_190 Hb_001584_190 Hb_000162_260--Hb_001584_190 Hb_037887_010 Hb_037887_010 Hb_000162_260--Hb_037887_010 Hb_012653_040 Hb_012653_040 Hb_000162_260--Hb_012653_040 Hb_066768_010 Hb_066768_010 Hb_000162_260--Hb_066768_010 Hb_000479_190 Hb_000479_190 Hb_000162_260--Hb_000479_190 Hb_000083_170--Hb_037887_010 Hb_005867_020 Hb_005867_020 Hb_000083_170--Hb_005867_020 Hb_000326_090 Hb_000326_090 Hb_000083_170--Hb_000326_090 Hb_000083_170--Hb_012653_040 Hb_002259_160 Hb_002259_160 Hb_000083_170--Hb_002259_160 Hb_001584_190--Hb_000479_190 Hb_012799_160 Hb_012799_160 Hb_001584_190--Hb_012799_160 Hb_000331_450 Hb_000331_450 Hb_001584_190--Hb_000331_450 Hb_002759_060 Hb_002759_060 Hb_001584_190--Hb_002759_060 Hb_010042_010 Hb_010042_010 Hb_001584_190--Hb_010042_010 Hb_006846_060 Hb_006846_060 Hb_001584_190--Hb_006846_060 Hb_003092_030 Hb_003092_030 Hb_037887_010--Hb_003092_030 Hb_000898_050 Hb_000898_050 Hb_037887_010--Hb_000898_050 Hb_006198_080 Hb_006198_080 Hb_037887_010--Hb_006198_080 Hb_006429_010 Hb_006429_010 Hb_037887_010--Hb_006429_010 Hb_037887_010--Hb_001584_190 Hb_180301_010 Hb_180301_010 Hb_012653_040--Hb_180301_010 Hb_001504_080 Hb_001504_080 Hb_012653_040--Hb_001504_080 Hb_012653_040--Hb_006198_080 Hb_012653_040--Hb_037887_010 Hb_004784_020 Hb_004784_020 Hb_066768_010--Hb_004784_020 Hb_001250_060 Hb_001250_060 Hb_066768_010--Hb_001250_060 Hb_031089_040 Hb_031089_040 Hb_066768_010--Hb_031089_040 Hb_066768_010--Hb_000326_090 Hb_066768_010--Hb_000083_170 Hb_066768_010--Hb_005867_020 Hb_000985_060 Hb_000985_060 Hb_000479_190--Hb_000985_060 Hb_003502_090 Hb_003502_090 Hb_000479_190--Hb_003502_090 Hb_003108_020 Hb_003108_020 Hb_000479_190--Hb_003108_020 Hb_001205_150 Hb_001205_150 Hb_000479_190--Hb_001205_150 Hb_000363_360 Hb_000363_360 Hb_000479_190--Hb_000363_360
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.6451 2.43751 5.80636 25.4314 12.5019 25.7335
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
17.4797 22.1835 23.3829 9.9679 4.61911

CAGE analysis