Hb_000163_050

Information

Type -
Description -
Location Contig163: 20984-24182
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12260g
description POPTRDRAFT_807512; SPLICEOSOMAL protein U1A
nr
ID XP_002320337.2
description SPLICEOSOMAL protein U1A [Populus trichocarpa]
swissprot
ID Q39244
description U1 small nuclear ribonucleoprotein A OS=Arabidopsis thaliana GN=U1A PE=1 SV=1
trembl
ID A9PEB3
description SPLICEOSOMAL protein U1A OS=Populus trichocarpa GN=POPTR_0014s12260g PE=2 SV=1
Gene Ontology
ID GO:0005685
description spliceosomal protein u1a

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14803: 20956-24150
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_050 0.0 - - SPLICEOSOMAL protein U1A [Populus trichocarpa]
2 Hb_009075_010 0.0686753122 - - 60S ribosomal protein L10B [Hevea brasiliensis]
3 Hb_000085_350 0.0814389804 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
4 Hb_003020_150 0.0903955636 - - tropinone reductase, putative [Ricinus communis]
5 Hb_000538_120 0.092772153 transcription factor TF Family: SET PREDICTED: protein SET DOMAIN GROUP 40 [Jatropha curcas]
6 Hb_000739_140 0.0965545999 - - PREDICTED: proteasome subunit beta type-1 [Jatropha curcas]
7 Hb_000413_280 0.0985597627 - - PREDICTED: probable UDP-3-O-acylglucosamine N-acyltransferase 2, mitochondrial [Jatropha curcas]
8 Hb_000377_120 0.0997527877 - - PREDICTED: acyl carrier protein 3, mitochondrial isoform X2 [Jatropha curcas]
9 Hb_001979_020 0.1001620346 - - hypothetical protein OsJ_31823 [Oryza sativa Japonica Group]
10 Hb_000922_040 0.1045535315 - - PREDICTED: CASP-like protein 4A3 [Jatropha curcas]
11 Hb_000896_040 0.1064144658 - - BnaC02g13240D [Brassica napus]
12 Hb_186982_040 0.107313936 - - hypothetical protein PHAVU_003G089200g [Phaseolus vulgaris]
13 Hb_000302_140 0.1074929878 - - PREDICTED: probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 5, mitochondrial [Jatropha curcas]
14 Hb_000136_350 0.1091444871 - - PREDICTED: 40S ribosomal protein S5 [Nomascus leucogenys]
15 Hb_002016_080 0.1098993338 - - PREDICTED: thiamine pyrophosphokinase 1 isoform X1 [Jatropha curcas]
16 Hb_005054_260 0.1099696969 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 7 homolog A [Jatropha curcas]
17 Hb_001053_140 0.1114780259 - - PREDICTED: ATP synthase subunit O, mitochondrial [Jatropha curcas]
18 Hb_003880_030 0.1130310832 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_000735_090 0.1130823405 - - PREDICTED: 40S ribosomal protein S8-like [Gossypium raimondii]
20 Hb_017491_020 0.1137563087 - - hypothetical protein B456_011G056700 [Gossypium raimondii]

Gene co-expression network

sample Hb_000163_050 Hb_000163_050 Hb_009075_010 Hb_009075_010 Hb_000163_050--Hb_009075_010 Hb_000085_350 Hb_000085_350 Hb_000163_050--Hb_000085_350 Hb_003020_150 Hb_003020_150 Hb_000163_050--Hb_003020_150 Hb_000538_120 Hb_000538_120 Hb_000163_050--Hb_000538_120 Hb_000739_140 Hb_000739_140 Hb_000163_050--Hb_000739_140 Hb_000413_280 Hb_000413_280 Hb_000163_050--Hb_000413_280 Hb_009075_010--Hb_000739_140 Hb_005054_260 Hb_005054_260 Hb_009075_010--Hb_005054_260 Hb_001979_020 Hb_001979_020 Hb_009075_010--Hb_001979_020 Hb_000896_040 Hb_000896_040 Hb_009075_010--Hb_000896_040 Hb_000377_120 Hb_000377_120 Hb_009075_010--Hb_000377_120 Hb_007747_050 Hb_007747_050 Hb_000085_350--Hb_007747_050 Hb_000085_350--Hb_000538_120 Hb_000735_090 Hb_000735_090 Hb_000085_350--Hb_000735_090 Hb_000155_160 Hb_000155_160 Hb_000085_350--Hb_000155_160 Hb_000302_140 Hb_000302_140 Hb_000085_350--Hb_000302_140 Hb_002811_170 Hb_002811_170 Hb_000085_350--Hb_002811_170 Hb_003020_150--Hb_001979_020 Hb_002232_060 Hb_002232_060 Hb_003020_150--Hb_002232_060 Hb_002016_080 Hb_002016_080 Hb_003020_150--Hb_002016_080 Hb_003880_030 Hb_003880_030 Hb_003020_150--Hb_003880_030 Hb_002260_010 Hb_002260_010 Hb_003020_150--Hb_002260_010 Hb_007894_060 Hb_007894_060 Hb_000538_120--Hb_007894_060 Hb_000136_260 Hb_000136_260 Hb_000538_120--Hb_000136_260 Hb_000538_120--Hb_000302_140 Hb_007928_030 Hb_007928_030 Hb_000538_120--Hb_007928_030 Hb_000571_020 Hb_000571_020 Hb_000538_120--Hb_000571_020 Hb_000538_120--Hb_000413_280 Hb_000739_140--Hb_005054_260 Hb_005306_070 Hb_005306_070 Hb_000739_140--Hb_005306_070 Hb_000768_130 Hb_000768_130 Hb_000739_140--Hb_000768_130 Hb_001053_140 Hb_001053_140 Hb_000739_140--Hb_001053_140 Hb_001410_060 Hb_001410_060 Hb_000739_140--Hb_001410_060 Hb_011671_440 Hb_011671_440 Hb_000413_280--Hb_011671_440 Hb_000413_280--Hb_002016_080 Hb_000413_280--Hb_000302_140 Hb_000413_280--Hb_000571_020 Hb_004705_080 Hb_004705_080 Hb_000413_280--Hb_004705_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.63158 4.45612 9.86554 10.9152 2.53439 3.70045
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
13.3032 24.8383 9.46173 13.6659 6.69941

CAGE analysis