Hb_000163_160

Information

Type -
Description -
Location Contig163: 110473-113169
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12370g
description small nuclear ribonucleoprotein D2
nr
ID KHN21625.1
description Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
swissprot
ID Q54NC5
description Probable small nuclear ribonucleoprotein Sm D2 OS=Dictyostelium discoideum GN=snrpd2 PE=3 SV=1
trembl
ID I1K5I1
description Uncharacterized protein OS=Glycine max PE=4 SV=1
Gene Ontology
ID GO:0030529
description small nuclear ribonucleoprotein sm d2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14813: 110438-113107 , PASA_asmbl_14815: 110457-113107
cDNA
(Sanger)
(ID:Location)		 020_C21.ab1: 110483-113076 , 036_F01.ab1: 110506-113031 , 047_L04.ab1: 110506-113031

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_160 0.0 - - Putative small nuclear ribonucleoprotein Sm D2 [Glycine soja]
2 Hb_010407_040 0.0563824362 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Nelumbo nucifera]
3 Hb_001369_660 0.0614313094 - - hypothetical protein B456_001G174200, partial [Gossypium raimondii]
4 Hb_000494_020 0.0676116086 - - PREDICTED: actin-related protein 2/3 complex subunit 5A [Jatropha curcas]
5 Hb_004800_230 0.0725610394 - - PREDICTED: MIP18 family protein At1g68310 [Jatropha curcas]
6 Hb_002105_090 0.0730566072 - - Rab4 [Hevea brasiliensis]
7 Hb_000000_160 0.0731751374 - - PREDICTED: membrin-11 [Jatropha curcas]
8 Hb_007432_080 0.0763546167 - - PREDICTED: mannose-6-phosphate isomerase 1-like [Jatropha curcas]
9 Hb_001604_080 0.0782040996 - - PREDICTED: uncharacterized protein LOC105638437 [Jatropha curcas]
10 Hb_001936_080 0.0793497473 - - PREDICTED: RNA-binding protein 48-like [Jatropha curcas]
11 Hb_007778_030 0.0795782106 transcription factor TF Family: mTERF conserved hypothetical protein [Ricinus communis]
12 Hb_010180_020 0.0803731239 - - hypothetical protein glysoja_030394 [Glycine soja]
13 Hb_003058_130 0.0821661807 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
14 Hb_168054_010 0.0824225205 - - PREDICTED: peptidyl-prolyl cis-trans isomerase CYP18-1 [Elaeis guineensis]
15 Hb_000054_100 0.0824363294 - - PREDICTED: metal tolerance protein C4 [Jatropha curcas]
16 Hb_000815_040 0.0830444337 transcription factor TF Family: M-type hypothetical protein JCGZ_15623 [Jatropha curcas]
17 Hb_001279_310 0.0842282022 - - hypothetical protein JCGZ_10212 [Jatropha curcas]
18 Hb_003878_010 0.0860004874 - - PREDICTED: uncharacterized protein LOC105632145 [Jatropha curcas]
19 Hb_003687_110 0.086043015 - - PREDICTED: uncharacterized protein At4g14342 isoform X1 [Malus domestica]
20 Hb_004324_310 0.0860705214 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000163_160 Hb_000163_160 Hb_010407_040 Hb_010407_040 Hb_000163_160--Hb_010407_040 Hb_001369_660 Hb_001369_660 Hb_000163_160--Hb_001369_660 Hb_000494_020 Hb_000494_020 Hb_000163_160--Hb_000494_020 Hb_004800_230 Hb_004800_230 Hb_000163_160--Hb_004800_230 Hb_002105_090 Hb_002105_090 Hb_000163_160--Hb_002105_090 Hb_000000_160 Hb_000000_160 Hb_000163_160--Hb_000000_160 Hb_010407_040--Hb_000494_020 Hb_145880_030 Hb_145880_030 Hb_010407_040--Hb_145880_030 Hb_003363_110 Hb_003363_110 Hb_010407_040--Hb_003363_110 Hb_007778_030 Hb_007778_030 Hb_010407_040--Hb_007778_030 Hb_010407_040--Hb_000000_160 Hb_004440_050 Hb_004440_050 Hb_001369_660--Hb_004440_050 Hb_168054_010 Hb_168054_010 Hb_001369_660--Hb_168054_010 Hb_010180_020 Hb_010180_020 Hb_001369_660--Hb_010180_020 Hb_001604_080 Hb_001604_080 Hb_001369_660--Hb_001604_080 Hb_003687_110 Hb_003687_110 Hb_001369_660--Hb_003687_110 Hb_000494_020--Hb_002105_090 Hb_000494_020--Hb_003363_110 Hb_000933_180 Hb_000933_180 Hb_000494_020--Hb_000933_180 Hb_001246_090 Hb_001246_090 Hb_000494_020--Hb_001246_090 Hb_000329_030 Hb_000329_030 Hb_004800_230--Hb_000329_030 Hb_024071_020 Hb_024071_020 Hb_004800_230--Hb_024071_020 Hb_003126_050 Hb_003126_050 Hb_004800_230--Hb_003126_050 Hb_004800_230--Hb_000494_020 Hb_001184_090 Hb_001184_090 Hb_004800_230--Hb_001184_090 Hb_004324_310 Hb_004324_310 Hb_002105_090--Hb_004324_310 Hb_032717_080 Hb_032717_080 Hb_002105_090--Hb_032717_080 Hb_070986_010 Hb_070986_010 Hb_002105_090--Hb_070986_010 Hb_002105_090--Hb_001184_090 Hb_002105_090--Hb_010407_040 Hb_002007_060 Hb_002007_060 Hb_000000_160--Hb_002007_060 Hb_023226_040 Hb_023226_040 Hb_000000_160--Hb_023226_040 Hb_000661_250 Hb_000661_250 Hb_000000_160--Hb_000661_250 Hb_011360_140 Hb_011360_140 Hb_000000_160--Hb_011360_140 Hb_000000_160--Hb_000494_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
103.73 38.7079 62.0787 58.5387 70.9733 125.216
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
128.959 141.84 64.8171 41.036 15.4124

CAGE analysis