Hb_000163_170

Information

Type -
Description -
Location Contig163: 113769-113978
Sequence    

Annotation

kegg
ID -
description -
nr
ID -
description -
swissprot
ID -
description -
trembl
ID -
description -
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_170 0.0 - - -
2 Hb_003607_090 0.0794336031 - - PREDICTED: probable pectate lyase 8 [Jatropha curcas]
3 Hb_003849_170 0.0941498389 - - hypothetical protein JCGZ_17850 [Jatropha curcas]
4 Hb_000910_030 0.0960712542 - - conserved hypothetical protein [Ricinus communis]
5 Hb_005144_150 0.1011123173 - - hypothetical protein VITISV_013572 [Vitis vinifera]
6 Hb_002869_090 0.1050700147 - - PREDICTED: dirigent protein 22-like [Jatropha curcas]
7 Hb_005332_160 0.1083192388 - - PREDICTED: BAG family molecular chaperone regulator 2-like [Jatropha curcas]
8 Hb_001257_140 0.1090438691 - - Gb:AAF02129.1, putative [Theobroma cacao]
9 Hb_000344_030 0.1095953948 - - phenylalanine ammonia-lyase 1 [Manihot esculenta]
10 Hb_000659_050 0.1106147546 - - PREDICTED: basic blue protein-like [Jatropha curcas]
11 Hb_002600_120 0.1130520041 - - hypothetical protein JCGZ_25652 [Jatropha curcas]
12 Hb_000789_160 0.1132616666 - - PREDICTED: LOW QUALITY PROTEIN: leucine-rich repeat extensin-like protein 4 [Jatropha curcas]
13 Hb_000086_530 0.1136401155 - - conserved hypothetical protein [Ricinus communis]
14 Hb_002616_020 0.1175615694 - - PREDICTED: peroxidase 3 [Jatropha curcas]
15 Hb_000352_360 0.1179556514 - - PREDICTED: 4-coumarate--CoA ligase 1-like [Jatropha curcas]
16 Hb_001856_260 0.1187834472 - - hypothetical protein JCGZ_09061 [Jatropha curcas]
17 Hb_002014_130 0.1198836284 - - conserved hypothetical protein [Ricinus communis]
18 Hb_000327_100 0.1256028449 - - hypothetical protein JCGZ_06658 [Jatropha curcas]
19 Hb_004531_160 0.1316437982 - - PREDICTED: transcription factor bHLH68-like isoform X1 [Jatropha curcas]
20 Hb_002701_030 0.1322329312 - - PREDICTED: uncharacterized protein At1g04910 [Jatropha curcas]

Gene co-expression network

sample Hb_000163_170 Hb_000163_170 Hb_003607_090 Hb_003607_090 Hb_000163_170--Hb_003607_090 Hb_003849_170 Hb_003849_170 Hb_000163_170--Hb_003849_170 Hb_000910_030 Hb_000910_030 Hb_000163_170--Hb_000910_030 Hb_005144_150 Hb_005144_150 Hb_000163_170--Hb_005144_150 Hb_002869_090 Hb_002869_090 Hb_000163_170--Hb_002869_090 Hb_005332_160 Hb_005332_160 Hb_000163_170--Hb_005332_160 Hb_003607_090--Hb_000910_030 Hb_003607_090--Hb_005332_160 Hb_000659_050 Hb_000659_050 Hb_003607_090--Hb_000659_050 Hb_004531_160 Hb_004531_160 Hb_003607_090--Hb_004531_160 Hb_003607_090--Hb_002869_090 Hb_001257_140 Hb_001257_140 Hb_003849_170--Hb_001257_140 Hb_170077_020 Hb_170077_020 Hb_003849_170--Hb_170077_020 Hb_005648_020 Hb_005648_020 Hb_003849_170--Hb_005648_020 Hb_003849_170--Hb_005144_150 Hb_002616_020 Hb_002616_020 Hb_003849_170--Hb_002616_020 Hb_000352_360 Hb_000352_360 Hb_003849_170--Hb_000352_360 Hb_000910_030--Hb_005332_160 Hb_000910_030--Hb_000659_050 Hb_001410_080 Hb_001410_080 Hb_000910_030--Hb_001410_080 Hb_000344_030 Hb_000344_030 Hb_000910_030--Hb_000344_030 Hb_000910_030--Hb_002869_090 Hb_005144_150--Hb_001257_140 Hb_003858_070 Hb_003858_070 Hb_005144_150--Hb_003858_070 Hb_001006_300 Hb_001006_300 Hb_005144_150--Hb_001006_300 Hb_017061_010 Hb_017061_010 Hb_005144_150--Hb_017061_010 Hb_001898_030 Hb_001898_030 Hb_005144_150--Hb_001898_030 Hb_002869_090--Hb_000659_050 Hb_002869_090--Hb_002616_020 Hb_000327_100 Hb_000327_100 Hb_002869_090--Hb_000327_100 Hb_002869_090--Hb_000352_360 Hb_027400_020 Hb_027400_020 Hb_002869_090--Hb_027400_020 Hb_000561_040 Hb_000561_040 Hb_002869_090--Hb_000561_040 Hb_001534_140 Hb_001534_140 Hb_005332_160--Hb_001534_140 Hb_005332_160--Hb_001410_080 Hb_169077_030 Hb_169077_030 Hb_005332_160--Hb_169077_030 Hb_141194_020 Hb_141194_020 Hb_005332_160--Hb_141194_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 4.12024 25.3843 172.185 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 1.06428 21.3359 33.2375

CAGE analysis