Hb_000163_180

Information

Type -
Description -
Location Contig163: 115094-118893
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12380g
description POPTRDRAFT_572692; UDP-XYLOSE SYNTHASE 4 family protein
nr
ID XP_012082771.1
description PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
swissprot
ID Q9LZI2
description UDP-glucuronic acid decarboxylase 2 OS=Arabidopsis thaliana GN=UXS2 PE=1 SV=1
trembl
ID A0A067K8N6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13935 PE=4 SV=1
Gene Ontology
ID GO:0003824
description udp-glucuronic acid decarboxylase 2

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14819: 115532-119058
cDNA
(Sanger)
(ID:Location)		 041_L05.ab1: 118307-119058

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_180 0.0 - - PREDICTED: UDP-glucuronic acid decarboxylase 2 [Jatropha curcas]
2 Hb_000365_180 0.0778209089 - - PREDICTED: protein LURP-one-related 8-like [Pyrus x bretschneideri]
3 Hb_142026_010 0.0821042723 - - PREDICTED: probable mannitol dehydrogenase [Jatropha curcas]
4 Hb_008749_010 0.095307444 - - PREDICTED: auxin efflux carrier component 3-like [Jatropha curcas]
5 Hb_030982_050 0.0967178855 - - PREDICTED: gamma-glutamyl hydrolase 2-like [Jatropha curcas]
6 Hb_003092_020 0.0972583107 - - PREDICTED: heptahelical transmembrane protein 1 [Jatropha curcas]
7 Hb_106089_010 0.1009733548 - - PREDICTED: cytochrome P450 CYP82D47-like [Jatropha curcas]
8 Hb_004228_070 0.10529573 - - PREDICTED: uncharacterized protein LOC103338699 [Prunus mume]
9 Hb_002205_150 0.1054196622 - - RING-H2 finger protein ATL3C, putative [Ricinus communis]
10 Hb_003747_250 0.1071972648 - - PREDICTED: potassium transporter 7 isoform X2 [Elaeis guineensis]
11 Hb_000098_260 0.1080734546 - - anthocyanidin 3-O-glucosyltransferase [Hevea brasiliensis]
12 Hb_012787_060 0.109688887 - - PREDICTED: glutathione S-transferase U17-like [Prunus mume]
13 Hb_004117_280 0.1127774839 - - hypothetical protein JCGZ_00361 [Jatropha curcas]
14 Hb_009476_070 0.1151084981 - - PREDICTED: gibberellin 2-beta-dioxygenase 2 [Jatropha curcas]
15 Hb_004634_030 0.1155891889 - - conserved hypothetical protein [Ricinus communis]
16 Hb_003454_050 0.1161546988 - - PREDICTED: probable methyltransferase PMT14 [Jatropha curcas]
17 Hb_007894_120 0.1179264783 - - PREDICTED: 1-acyl-sn-glycerol-3-phosphate acyltransferase-like isoform X1 [Jatropha curcas]
18 Hb_000946_050 0.1191523482 - - cytochrome P450, putative [Ricinus communis]
19 Hb_001440_010 0.1224912553 - - PREDICTED: armadillo repeat-containing kinesin-like protein 1 [Populus euphratica]
20 Hb_000365_430 0.1226259441 - - PREDICTED: BTB/POZ domain-containing protein At3g08570-like [Jatropha curcas]

Gene co-expression network

sample Hb_000163_180 Hb_000163_180 Hb_000365_180 Hb_000365_180 Hb_000163_180--Hb_000365_180 Hb_142026_010 Hb_142026_010 Hb_000163_180--Hb_142026_010 Hb_008749_010 Hb_008749_010 Hb_000163_180--Hb_008749_010 Hb_030982_050 Hb_030982_050 Hb_000163_180--Hb_030982_050 Hb_003092_020 Hb_003092_020 Hb_000163_180--Hb_003092_020 Hb_106089_010 Hb_106089_010 Hb_000163_180--Hb_106089_010 Hb_009476_070 Hb_009476_070 Hb_000365_180--Hb_009476_070 Hb_001989_070 Hb_001989_070 Hb_000365_180--Hb_001989_070 Hb_000365_180--Hb_008749_010 Hb_002010_100 Hb_002010_100 Hb_000365_180--Hb_002010_100 Hb_033187_020 Hb_033187_020 Hb_000365_180--Hb_033187_020 Hb_002205_150 Hb_002205_150 Hb_142026_010--Hb_002205_150 Hb_002902_040 Hb_002902_040 Hb_142026_010--Hb_002902_040 Hb_019496_040 Hb_019496_040 Hb_142026_010--Hb_019496_040 Hb_142026_010--Hb_106089_010 Hb_003454_050 Hb_003454_050 Hb_142026_010--Hb_003454_050 Hb_003747_250 Hb_003747_250 Hb_008749_010--Hb_003747_250 Hb_000878_090 Hb_000878_090 Hb_008749_010--Hb_000878_090 Hb_004228_070 Hb_004228_070 Hb_008749_010--Hb_004228_070 Hb_008749_010--Hb_001989_070 Hb_006970_170 Hb_006970_170 Hb_030982_050--Hb_006970_170 Hb_030982_050--Hb_106089_010 Hb_030982_050--Hb_142026_010 Hb_001141_160 Hb_001141_160 Hb_030982_050--Hb_001141_160 Hb_000046_430 Hb_000046_430 Hb_030982_050--Hb_000046_430 Hb_026240_020 Hb_026240_020 Hb_003092_020--Hb_026240_020 Hb_000365_430 Hb_000365_430 Hb_003092_020--Hb_000365_430 Hb_004117_280 Hb_004117_280 Hb_003092_020--Hb_004117_280 Hb_003092_020--Hb_142026_010 Hb_000098_260 Hb_000098_260 Hb_003092_020--Hb_000098_260 Hb_003092_020--Hb_003454_050 Hb_106089_010--Hb_003454_050 Hb_106089_010--Hb_002205_150 Hb_106089_010--Hb_002902_040 Hb_106089_010--Hb_006970_170
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0828717 35.5493 51.3512 51.8587 0.0328933 0.0748163
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.260339 0.286764 0.309585 22.048 25.3934

CAGE analysis