Hb_000163_190

Information

Type -
Description -
Location Contig163: 124705-125304
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12390g
description POPTRDRAFT_1099186; hypothetical protein
nr
ID XP_011033536.1
description PREDICTED: 21 kDa protein [Populus euphratica]
swissprot
ID P17407
description 21 kDa protein OS=Daucus carota PE=2 SV=1
trembl
ID B9I9R5
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0014s12390g PE=4 SV=1
Gene Ontology
ID GO:0004857
description 21 kda

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_190 0.0 - - PREDICTED: 21 kDa protein [Populus euphratica]
2 Hb_000915_210 0.0742270225 - - conserved hypothetical protein [Ricinus communis]
3 Hb_149644_030 0.0745796479 - - hypothetical protein POPTR_0005s18750g [Populus trichocarpa]
4 Hb_002743_010 0.077542096 - - conserved hypothetical protein [Ricinus communis]
5 Hb_001571_100 0.0805157256 - - chlorophyll A-B binding family protein [Populus trichocarpa]
6 Hb_000731_150 0.0844437391 - - PREDICTED: cytochrome P450 77A1 [Jatropha curcas]
7 Hb_000557_070 0.084962025 - - S-locus-specific glycoprotein S13 precursor, putative [Ricinus communis]
8 Hb_000333_010 0.0878067463 - - hypothetical protein POPTR_0006s14510g [Populus trichocarpa]
9 Hb_006117_030 0.0887594273 - - conserved hypothetical protein [Ricinus communis]
10 Hb_014056_020 0.0895681615 - - zinc finger protein, putative [Ricinus communis]
11 Hb_002276_220 0.0905311682 - - PREDICTED: uncharacterized protein LOC105640684 isoform X2 [Jatropha curcas]
12 Hb_000512_120 0.092731701 transcription factor TF Family: B3 PREDICTED: B3 domain-containing transcription factor NGA1-like [Jatropha curcas]
13 Hb_041433_010 0.0936073415 transcription factor TF Family: G2-like DNA binding protein, putative [Ricinus communis]
14 Hb_002028_020 0.0938275217 - - acyltransferase, putative [Ricinus communis]
15 Hb_004724_090 0.0939935603 - - PREDICTED: uncharacterized protein LOC105638638 [Jatropha curcas]
16 Hb_005345_020 0.0958180089 - - Root phototropism protein, putative [Ricinus communis]
17 Hb_003086_140 0.0968626945 transcription factor TF Family: C2C2-YABBY PREDICTED: protein YABBY 6-like isoform X2 [Jatropha curcas]
18 Hb_001135_310 0.0971223508 - - Chlorophyll a-b binding protein 6A [Morus notabilis]
19 Hb_068580_010 0.0980336376 - - PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 isoform X2 [Populus euphratica]
20 Hb_001534_060 0.0984992532 - - PREDICTED: UDP-glycosyltransferase 73C3 [Jatropha curcas]

Gene co-expression network

sample Hb_000163_190 Hb_000163_190 Hb_000915_210 Hb_000915_210 Hb_000163_190--Hb_000915_210 Hb_149644_030 Hb_149644_030 Hb_000163_190--Hb_149644_030 Hb_002743_010 Hb_002743_010 Hb_000163_190--Hb_002743_010 Hb_001571_100 Hb_001571_100 Hb_000163_190--Hb_001571_100 Hb_000731_150 Hb_000731_150 Hb_000163_190--Hb_000731_150 Hb_000557_070 Hb_000557_070 Hb_000163_190--Hb_000557_070 Hb_000915_210--Hb_002743_010 Hb_014056_020 Hb_014056_020 Hb_000915_210--Hb_014056_020 Hb_006117_030 Hb_006117_030 Hb_000915_210--Hb_006117_030 Hb_002965_170 Hb_002965_170 Hb_000915_210--Hb_002965_170 Hb_000915_210--Hb_000731_150 Hb_000915_210--Hb_001571_100 Hb_002028_020 Hb_002028_020 Hb_149644_030--Hb_002028_020 Hb_034235_010 Hb_034235_010 Hb_149644_030--Hb_034235_010 Hb_001488_230 Hb_001488_230 Hb_149644_030--Hb_001488_230 Hb_149644_030--Hb_001571_100 Hb_009588_010 Hb_009588_010 Hb_149644_030--Hb_009588_010 Hb_000042_280 Hb_000042_280 Hb_149644_030--Hb_000042_280 Hb_002743_010--Hb_014056_020 Hb_002743_010--Hb_001571_100 Hb_001135_310 Hb_001135_310 Hb_002743_010--Hb_001135_310 Hb_000512_120 Hb_000512_120 Hb_002743_010--Hb_000512_120 Hb_002743_010--Hb_000731_150 Hb_001571_100--Hb_002028_020 Hb_005345_020 Hb_005345_020 Hb_001571_100--Hb_005345_020 Hb_000333_010 Hb_000333_010 Hb_001571_100--Hb_000333_010 Hb_041433_010 Hb_041433_010 Hb_001571_100--Hb_041433_010 Hb_001571_100--Hb_000557_070 Hb_001205_220 Hb_001205_220 Hb_000731_150--Hb_001205_220 Hb_004993_020 Hb_004993_020 Hb_000731_150--Hb_004993_020 Hb_000731_150--Hb_000557_070 Hb_001519_140 Hb_001519_140 Hb_000731_150--Hb_001519_140 Hb_068580_010 Hb_068580_010 Hb_000731_150--Hb_068580_010 Hb_004724_090 Hb_004724_090 Hb_000557_070--Hb_004724_090 Hb_000557_070--Hb_006117_030 Hb_000557_070--Hb_004993_020 Hb_000557_070--Hb_068580_010 Hb_000557_070--Hb_002743_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.110352 0.214896 13.393 6.37083 0.0875351 0.232768
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.0325444 14.4362

CAGE analysis