Hb_000163_200

Information

Type -
Description -
Location Contig163: 126887-131385
Sequence    

Annotation

kegg
ID rcu:RCOM_1178160
description hypothetical protein
nr
ID XP_012082767.1
description PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
swissprot
ID Q0UIG9
description Mitochondrial zinc maintenance protein 1, mitochondrial OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 / FGSC 10173) GN=MZM1 PE=3 SV=2
trembl
ID A0A067K7D0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13931 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14823: 126975-128112 , PASA_asmbl_14824: 128447-131180
cDNA
(Sanger)
(ID:Location)		 004_E04.ab1: 127081-128112 , 009_E22.ab1: 127081-128112 , 023_B09.ab1: 127914-128106

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_200 0.0 - - PREDICTED: uncharacterized protein LOC105642527 [Jatropha curcas]
2 Hb_004242_080 0.0831027192 - - PREDICTED: uncharacterized protein LOC105632857 [Jatropha curcas]
3 Hb_004607_140 0.0885438577 transcription factor TF Family: AP2 PREDICTED: AP2-like ethylene-responsive transcription factor PLT1 [Populus euphratica]
4 Hb_001951_110 0.0891824025 - - PREDICTED: DNA-binding protein DDB_G0278111 [Jatropha curcas]
5 Hb_157854_010 0.0982330365 - - PREDICTED: myb family transcription factor APL-like [Jatropha curcas]
6 Hb_000417_110 0.1032854399 - - PREDICTED: uncharacterized protein LOC105649681 [Jatropha curcas]
7 Hb_000479_180 0.1067793458 - - conserved hypothetical protein [Ricinus communis]
8 Hb_002529_100 0.1085586528 - - PREDICTED: DET1- and DDB1-associated protein 1 isoform X1 [Jatropha curcas]
9 Hb_001623_240 0.1090754872 - - hypothetical protein VITISV_004933 [Vitis vinifera]
10 Hb_001454_330 0.1093861407 - - PREDICTED: 60S ribosomal protein L22-2-like [Jatropha curcas]
11 Hb_000318_380 0.1104466738 - - PREDICTED: diphthamide biosynthesis protein 3-like [Jatropha curcas]
12 Hb_000634_050 0.1126528601 - - PREDICTED: uncharacterized protein LOC105636623 [Jatropha curcas]
13 Hb_000522_080 0.1136605396 - - PREDICTED: uncharacterized protein LOC105632108 [Jatropha curcas]
14 Hb_003057_050 0.1157251004 - - PREDICTED: uncharacterized protein LOC105635336 [Jatropha curcas]
15 Hb_004204_030 0.1159434176 - - unknown [Populus trichocarpa]
16 Hb_001584_070 0.1171204821 - - conserved hypothetical protein [Ricinus communis]
17 Hb_003086_110 0.1176319458 - - PREDICTED: dihydroneopterin aldolase-like isoform X2 [Prunus mume]
18 Hb_000866_300 0.1178315989 - - hypothetical protein CICLE_v10023145mg [Citrus clementina]
19 Hb_001824_070 0.1194340869 - - H/ACA ribonucleoprotein complex subunit, putative [Ricinus communis]
20 Hb_001804_040 0.1202128852 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000163_200 Hb_000163_200 Hb_004242_080 Hb_004242_080 Hb_000163_200--Hb_004242_080 Hb_004607_140 Hb_004607_140 Hb_000163_200--Hb_004607_140 Hb_001951_110 Hb_001951_110 Hb_000163_200--Hb_001951_110 Hb_157854_010 Hb_157854_010 Hb_000163_200--Hb_157854_010 Hb_000417_110 Hb_000417_110 Hb_000163_200--Hb_000417_110 Hb_000479_180 Hb_000479_180 Hb_000163_200--Hb_000479_180 Hb_000522_080 Hb_000522_080 Hb_004242_080--Hb_000522_080 Hb_034350_010 Hb_034350_010 Hb_004242_080--Hb_034350_010 Hb_001221_410 Hb_001221_410 Hb_004242_080--Hb_001221_410 Hb_000987_120 Hb_000987_120 Hb_004242_080--Hb_000987_120 Hb_070986_010 Hb_070986_010 Hb_004242_080--Hb_070986_010 Hb_000272_100 Hb_000272_100 Hb_004607_140--Hb_000272_100 Hb_004607_140--Hb_157854_010 Hb_004204_030 Hb_004204_030 Hb_004607_140--Hb_004204_030 Hb_006824_020 Hb_006824_020 Hb_004607_140--Hb_006824_020 Hb_000732_260 Hb_000732_260 Hb_004607_140--Hb_000732_260 Hb_001804_040 Hb_001804_040 Hb_001951_110--Hb_001804_040 Hb_000866_300 Hb_000866_300 Hb_001951_110--Hb_000866_300 Hb_001951_110--Hb_000417_110 Hb_001951_110--Hb_004204_030 Hb_000392_270 Hb_000392_270 Hb_001951_110--Hb_000392_270 Hb_002529_100 Hb_002529_100 Hb_001951_110--Hb_002529_100 Hb_002762_060 Hb_002762_060 Hb_157854_010--Hb_002762_060 Hb_118977_020 Hb_118977_020 Hb_157854_010--Hb_118977_020 Hb_003086_020 Hb_003086_020 Hb_157854_010--Hb_003086_020 Hb_003185_020 Hb_003185_020 Hb_157854_010--Hb_003185_020 Hb_022250_040 Hb_022250_040 Hb_157854_010--Hb_022250_040 Hb_000634_050 Hb_000634_050 Hb_000417_110--Hb_000634_050 Hb_001584_070 Hb_001584_070 Hb_000417_110--Hb_001584_070 Hb_000798_030 Hb_000798_030 Hb_000417_110--Hb_000798_030 Hb_003058_070 Hb_003058_070 Hb_000417_110--Hb_003058_070 Hb_003001_060 Hb_003001_060 Hb_000417_110--Hb_003001_060 Hb_004595_020 Hb_004595_020 Hb_000479_180--Hb_004595_020 Hb_011139_020 Hb_011139_020 Hb_000479_180--Hb_011139_020 Hb_000362_210 Hb_000362_210 Hb_000479_180--Hb_000362_210 Hb_012515_010 Hb_012515_010 Hb_000479_180--Hb_012515_010 Hb_000479_180--Hb_000634_050 Hb_000061_330 Hb_000061_330 Hb_000479_180--Hb_000061_330
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
52.7896 16.7298 6.10896 9.14516 60.3158 47.8523
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
110.15 90.4494 37.0869 29.243 4.64934

CAGE analysis