Hb_000163_210

Information

Type -
Description -
Location Contig163: 136397-139591
Sequence    

Annotation

kegg
ID eus:EUTSA_v10006347mg
description hypothetical protein
nr
ID XP_010545018.1
description PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
swissprot
ID Q9LZI6
description NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B OS=Arabidopsis thaliana GN=At3g62790 PE=3 SV=1
trembl
ID V4LJ80
description Uncharacterized protein OS=Eutrema salsugineum GN=EUTSA_v10006347mg PE=4 SV=1
Gene Ontology
ID GO:0005634
description nadh dehydrogenase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14825: 136451-139446
cDNA
(Sanger)
(ID:Location)		 004_G19.ab1: 136451-139141

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_210 0.0 - - PREDICTED: NADH dehydrogenase [ubiquinone] iron-sulfur protein 5-B [Tarenaya hassleriana]
2 Hb_000083_090 0.0666291763 - - immunophilin, putative [Ricinus communis]
3 Hb_000260_200 0.07066401 - - -
4 Hb_012539_020 0.0799817506 - - protein binding/ubiquitin-protein ligase 4 [Hevea brasiliensis]
5 Hb_000389_080 0.0885754998 - - PREDICTED: uncharacterized protein At4g26485-like [Jatropha curcas]
6 Hb_005000_180 0.093146329 - - hypothetical protein JCGZ_07408 [Jatropha curcas]
7 Hb_000069_140 0.1005429489 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
8 Hb_001377_380 0.1030739881 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]
9 Hb_001785_040 0.1070058193 - - cytochrome b5 isoform Cb5-A [Vernicia fordii]
10 Hb_005663_120 0.1070559037 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
11 Hb_002603_150 0.1087522847 - - PREDICTED: protein yippee-like [Jatropha curcas]
12 Hb_001076_020 0.1088942041 - - PREDICTED: cytochrome b-c1 complex subunit 8 [Eucalyptus grandis]
13 Hb_002391_220 0.1091337942 - - PREDICTED: UPF0548 protein At2g17695 [Jatropha curcas]
14 Hb_120823_010 0.1099097677 - - -
15 Hb_000780_210 0.1111436527 - - PREDICTED: transmembrane protein 256 homolog [Jatropha curcas]
16 Hb_002518_290 0.1115716153 - - Acyl-coenzyme A thioesterase 13 [Gossypium arboreum]
17 Hb_000445_490 0.1127412287 - - -
18 Hb_002316_120 0.1144594536 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
19 Hb_000300_390 0.1146171171 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
20 Hb_001096_030 0.1148568671 - - uridylate kinase plant, putative [Ricinus communis]

Gene co-expression network

sample Hb_000163_210 Hb_000163_210 Hb_000083_090 Hb_000083_090 Hb_000163_210--Hb_000083_090 Hb_000260_200 Hb_000260_200 Hb_000163_210--Hb_000260_200 Hb_012539_020 Hb_012539_020 Hb_000163_210--Hb_012539_020 Hb_000389_080 Hb_000389_080 Hb_000163_210--Hb_000389_080 Hb_005000_180 Hb_005000_180 Hb_000163_210--Hb_005000_180 Hb_000069_140 Hb_000069_140 Hb_000163_210--Hb_000069_140 Hb_000083_090--Hb_000260_200 Hb_001424_020 Hb_001424_020 Hb_000083_090--Hb_001424_020 Hb_000083_090--Hb_000389_080 Hb_000193_120 Hb_000193_120 Hb_000083_090--Hb_000193_120 Hb_004156_040 Hb_004156_040 Hb_000083_090--Hb_004156_040 Hb_002391_220 Hb_002391_220 Hb_000260_200--Hb_002391_220 Hb_000260_200--Hb_000069_140 Hb_000260_200--Hb_001424_020 Hb_001785_040 Hb_001785_040 Hb_000260_200--Hb_001785_040 Hb_000260_200--Hb_012539_020 Hb_012539_020--Hb_000389_080 Hb_005914_200 Hb_005914_200 Hb_012539_020--Hb_005914_200 Hb_001780_050 Hb_001780_050 Hb_012539_020--Hb_001780_050 Hb_000300_390 Hb_000300_390 Hb_012539_020--Hb_000300_390 Hb_002316_120 Hb_002316_120 Hb_012539_020--Hb_002316_120 Hb_005663_120 Hb_005663_120 Hb_012539_020--Hb_005663_120 Hb_000389_080--Hb_001780_050 Hb_000163_130 Hb_000163_130 Hb_000389_080--Hb_000163_130 Hb_000905_180 Hb_000905_180 Hb_000389_080--Hb_000905_180 Hb_001155_040 Hb_001155_040 Hb_000389_080--Hb_001155_040 Hb_003053_030 Hb_003053_030 Hb_000389_080--Hb_003053_030 Hb_062135_020 Hb_062135_020 Hb_005000_180--Hb_062135_020 Hb_000302_290 Hb_000302_290 Hb_005000_180--Hb_000302_290 Hb_120823_010 Hb_120823_010 Hb_005000_180--Hb_120823_010 Hb_005000_180--Hb_000300_390 Hb_000239_030 Hb_000239_030 Hb_005000_180--Hb_000239_030 Hb_000069_140--Hb_002391_220 Hb_000069_140--Hb_012539_020 Hb_000820_130 Hb_000820_130 Hb_000069_140--Hb_000820_130 Hb_000069_140--Hb_001424_020 Hb_000270_720 Hb_000270_720 Hb_000069_140--Hb_000270_720
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
16.465 3.89344 10.648 17.455 10.4722 12.6616
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
92.2347 106.613 60.6388 27.5345 20.7103

CAGE analysis