Hb_000163_230

Information

Type -
Description -
Location Contig163: 153620-154606
Sequence    

Annotation

kegg
ID rcu:RCOM_1178010
description Phytochrome A-associated F-box protein, putative
nr
ID XP_002523077.1
description Phytochrome A-associated F-box protein, putative [Ricinus communis]
swissprot
ID Q8LEA8
description Phytochrome A-associated F-box protein OS=Arabidopsis thaliana GN=EID1 PE=1 SV=2
trembl
ID B9SAQ8
description Phytochrome A-associated F-box protein, putative OS=Ricinus communis GN=RCOM_1178010 PE=4 SV=1
Gene Ontology
ID GO:0000166
description phytochrome a-associated f-box protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14831: 153347-154823
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_230 0.0 - - Phytochrome A-associated F-box protein, putative [Ricinus communis]
2 Hb_000454_140 0.0672475215 transcription factor TF Family: bZIP PREDICTED: transcription factor RF2a-like [Jatropha curcas]
3 Hb_001009_090 0.0859310012 - - CDK protein [Hevea brasiliensis]
4 Hb_000045_260 0.088871836 - - protein with unknown function [Ricinus communis]
5 Hb_003078_030 0.0915377703 - - PREDICTED: E3 ubiquitin-protein ligase CHIP [Jatropha curcas]
6 Hb_000671_060 0.0996118782 - - protein binding protein, putative [Ricinus communis]
7 Hb_000186_200 0.100910462 - - PREDICTED: UBA and UBX domain-containing protein At4g15410-like [Populus euphratica]
8 Hb_091226_010 0.1011621128 - - PREDICTED: mitogen-activated protein kinase kinase kinase YODA isoform X1 [Jatropha curcas]
9 Hb_090782_010 0.1020846646 - - PREDICTED: diacylglycerol kinase 5-like [Jatropha curcas]
10 Hb_005649_090 0.1024038006 - - PREDICTED: ninja-family protein AFP3-like [Jatropha curcas]
11 Hb_007849_050 0.1032706542 transcription factor TF Family: Jumonji PREDICTED: putative lysine-specific demethylase JMJ16 [Jatropha curcas]
12 Hb_000056_300 0.105281408 - - PREDICTED: probable methyltransferase PMT2 isoform X2 [Jatropha curcas]
13 Hb_000084_240 0.1087596813 - - PREDICTED: F-box/kelch-repeat protein At1g57790-like [Jatropha curcas]
14 Hb_012305_140 0.1107338812 transcription factor TF Family: CAMTA PREDICTED: calmodulin-binding transcription activator 5-like isoform X1 [Jatropha curcas]
15 Hb_005394_010 0.111774354 - - PREDICTED: calmodulin-binding protein 25-like [Jatropha curcas]
16 Hb_002701_210 0.1126858368 - - Protein COBRA precursor, putative [Ricinus communis]
17 Hb_000608_280 0.1134629649 - - Aspartic proteinase Asp1 precursor, putative [Ricinus communis]
18 Hb_005496_160 0.1168671999 - - PREDICTED: calcium-transporting ATPase 1, chloroplastic [Jatropha curcas]
19 Hb_048755_020 0.1206527238 - - hypothetical protein JCGZ_09860 [Jatropha curcas]
20 Hb_001410_130 0.1229595663 - - hypothetical protein POPTR_0001s10880g [Populus trichocarpa]

Gene co-expression network

sample Hb_000163_230 Hb_000163_230 Hb_000454_140 Hb_000454_140 Hb_000163_230--Hb_000454_140 Hb_001009_090 Hb_001009_090 Hb_000163_230--Hb_001009_090 Hb_000045_260 Hb_000045_260 Hb_000163_230--Hb_000045_260 Hb_003078_030 Hb_003078_030 Hb_000163_230--Hb_003078_030 Hb_000671_060 Hb_000671_060 Hb_000163_230--Hb_000671_060 Hb_000186_200 Hb_000186_200 Hb_000163_230--Hb_000186_200 Hb_007849_050 Hb_007849_050 Hb_000454_140--Hb_007849_050 Hb_000454_140--Hb_000045_260 Hb_012305_140 Hb_012305_140 Hb_000454_140--Hb_012305_140 Hb_005694_130 Hb_005694_130 Hb_000454_140--Hb_005694_130 Hb_005499_010 Hb_005499_010 Hb_000454_140--Hb_005499_010 Hb_001410_130 Hb_001410_130 Hb_001009_090--Hb_001410_130 Hb_004526_010 Hb_004526_010 Hb_001009_090--Hb_004526_010 Hb_000941_080 Hb_000941_080 Hb_001009_090--Hb_000941_080 Hb_005649_090 Hb_005649_090 Hb_001009_090--Hb_005649_090 Hb_001009_090--Hb_000186_200 Hb_011631_010 Hb_011631_010 Hb_000045_260--Hb_011631_010 Hb_000638_280 Hb_000638_280 Hb_000045_260--Hb_000638_280 Hb_002897_050 Hb_002897_050 Hb_000045_260--Hb_002897_050 Hb_000084_240 Hb_000084_240 Hb_000045_260--Hb_000084_240 Hb_000056_300 Hb_000056_300 Hb_003078_030--Hb_000056_300 Hb_003078_030--Hb_000186_200 Hb_003078_030--Hb_001009_090 Hb_005000_300 Hb_005000_300 Hb_003078_030--Hb_005000_300 Hb_000836_370 Hb_000836_370 Hb_003078_030--Hb_000836_370 Hb_003090_150 Hb_003090_150 Hb_000671_060--Hb_003090_150 Hb_002311_140 Hb_002311_140 Hb_000671_060--Hb_002311_140 Hb_000671_060--Hb_012305_140 Hb_001196_080 Hb_001196_080 Hb_000671_060--Hb_001196_080 Hb_000261_280 Hb_000261_280 Hb_000671_060--Hb_000261_280 Hb_002701_210 Hb_002701_210 Hb_000186_200--Hb_002701_210 Hb_000186_200--Hb_000084_240 Hb_000186_200--Hb_000045_260
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
34.3548 163.006 106.749 64.6326 28.4035 31.1547
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.5259 17.5417 18.5513 24.038 30.6357

CAGE analysis