Hb_000163_240

Information

Type -
Description -
Location Contig163: 157710-161849
Sequence    

Annotation

kegg
ID rcu:RCOM_1178000
description hypothetical protein
nr
ID XP_012082758.1
description PREDICTED: protein OPI10 homolog [Jatropha curcas]
swissprot
ID Q568T4
description Protein Hikeshi OS=Danio rerio GN=zgc:110091 PE=2 SV=2
trembl
ID A0A067K7C5
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13926 PE=4 SV=1
Gene Ontology
ID GO:0005829
description protein opi10 homolog

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14834: 157795-159229
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_240 0.0 - - PREDICTED: protein OPI10 homolog [Jatropha curcas]
2 Hb_001898_240 0.1120304129 - - PREDICTED: uncharacterized protein LOC105779688 [Gossypium raimondii]
3 Hb_003682_030 0.1170483093 - - hypothetical protein CICLE_v10020876mg [Citrus clementina]
4 Hb_010998_040 0.1215141263 transcription factor TF Family: MYB myb3r3, putative [Ricinus communis]
5 Hb_003666_020 0.1247558841 - - kinase, putative [Ricinus communis]
6 Hb_004648_090 0.1267598597 - - peroxisomal biogenesis factor, putative [Ricinus communis]
7 Hb_001804_110 0.1275511958 - - hypothetical protein CISIN_1g031200mg [Citrus sinensis]
8 Hb_002228_110 0.1295928195 - - cytochrome b5 isoform Cb5-B [Vernicia fordii]
9 Hb_001140_030 0.1298369535 - - PREDICTED: E3 ubiquitin-protein ligase XBAT33 [Jatropha curcas]
10 Hb_003124_220 0.1313765547 - - PREDICTED: coiled-coil domain-containing protein 93 [Jatropha curcas]
11 Hb_001258_020 0.1314636615 - - PREDICTED: protein RMD5 homolog A [Jatropha curcas]
12 Hb_102291_010 0.1348286879 - - PREDICTED: histone chaperone ASF1B [Populus euphratica]
13 Hb_001864_070 0.1349773255 - - PREDICTED: probable histone H2A.3 [Jatropha curcas]
14 Hb_000144_100 0.1364623616 - - PREDICTED: iron-sulfur assembly protein IscA-like 2, mitochondrial [Jatropha curcas]
15 Hb_000656_250 0.1376622053 - - hypothetical protein JCGZ_24680 [Jatropha curcas]
16 Hb_004916_020 0.1385553634 - - PREDICTED: DNA ligase 4 [Jatropha curcas]
17 Hb_005288_170 0.1386087902 - - PREDICTED: pentatricopeptide repeat-containing protein At1g08610 [Populus euphratica]
18 Hb_000979_170 0.1394668049 - - clathrin assembly protein, putative [Ricinus communis]
19 Hb_000358_230 0.1395856983 - - protein phosphatases pp1 regulatory subunit, putative [Ricinus communis]
20 Hb_000402_080 0.1404794349 - - PREDICTED: pentatricopeptide repeat-containing protein At1g60770 [Jatropha curcas]

Gene co-expression network

sample Hb_000163_240 Hb_000163_240 Hb_001898_240 Hb_001898_240 Hb_000163_240--Hb_001898_240 Hb_003682_030 Hb_003682_030 Hb_000163_240--Hb_003682_030 Hb_010998_040 Hb_010998_040 Hb_000163_240--Hb_010998_040 Hb_003666_020 Hb_003666_020 Hb_000163_240--Hb_003666_020 Hb_004648_090 Hb_004648_090 Hb_000163_240--Hb_004648_090 Hb_001804_110 Hb_001804_110 Hb_000163_240--Hb_001804_110 Hb_006261_090 Hb_006261_090 Hb_001898_240--Hb_006261_090 Hb_001864_070 Hb_001864_070 Hb_001898_240--Hb_001864_070 Hb_000009_530 Hb_000009_530 Hb_001898_240--Hb_000009_530 Hb_002228_110 Hb_002228_110 Hb_001898_240--Hb_002228_110 Hb_000610_010 Hb_000610_010 Hb_001898_240--Hb_000610_010 Hb_003621_020 Hb_003621_020 Hb_001898_240--Hb_003621_020 Hb_001225_030 Hb_001225_030 Hb_003682_030--Hb_001225_030 Hb_008695_090 Hb_008695_090 Hb_003682_030--Hb_008695_090 Hb_000723_110 Hb_000723_110 Hb_003682_030--Hb_000723_110 Hb_005306_160 Hb_005306_160 Hb_003682_030--Hb_005306_160 Hb_004870_050 Hb_004870_050 Hb_003682_030--Hb_004870_050 Hb_000094_090 Hb_000094_090 Hb_003682_030--Hb_000094_090 Hb_010998_040--Hb_001804_110 Hb_001140_030 Hb_001140_030 Hb_010998_040--Hb_001140_030 Hb_000959_230 Hb_000959_230 Hb_010998_040--Hb_000959_230 Hb_010362_030 Hb_010362_030 Hb_010998_040--Hb_010362_030 Hb_000139_190 Hb_000139_190 Hb_010998_040--Hb_000139_190 Hb_000130_420 Hb_000130_420 Hb_010998_040--Hb_000130_420 Hb_004553_030 Hb_004553_030 Hb_003666_020--Hb_004553_030 Hb_000928_220 Hb_000928_220 Hb_003666_020--Hb_000928_220 Hb_000402_080 Hb_000402_080 Hb_003666_020--Hb_000402_080 Hb_001258_020 Hb_001258_020 Hb_003666_020--Hb_001258_020 Hb_008103_060 Hb_008103_060 Hb_003666_020--Hb_008103_060 Hb_001205_200 Hb_001205_200 Hb_003666_020--Hb_001205_200 Hb_004648_090--Hb_004870_050 Hb_002110_160 Hb_002110_160 Hb_004648_090--Hb_002110_160 Hb_004648_090--Hb_002228_110 Hb_005389_100 Hb_005389_100 Hb_004648_090--Hb_005389_100 Hb_004648_090--Hb_010998_040 Hb_001671_040 Hb_001671_040 Hb_004648_090--Hb_001671_040 Hb_001804_110--Hb_000959_230 Hb_003746_030 Hb_003746_030 Hb_001804_110--Hb_003746_030 Hb_002054_050 Hb_002054_050 Hb_001804_110--Hb_002054_050 Hb_006688_050 Hb_006688_050 Hb_001804_110--Hb_006688_050 Hb_001804_110--Hb_001140_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
35.4069 81.2475 67.132 48.6292 95.2577 38.3771
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
27.8946 63.3611 24.9148 18.4339 21.8118

CAGE analysis