Hb_000163_260

Information

Type -
Description -
Location Contig163: 177277-182574
Sequence    

Annotation

kegg
ID rcu:RCOM_1177930
description DNA binding protein, putative
nr
ID XP_012082753.1
description PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K8M0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13920 PE=4 SV=1
Gene Ontology
ID GO:0008270
description dna binding

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14843: 177298-182522 , PASA_asmbl_14846: 183537-185783
cDNA
(Sanger)
(ID:Location)		 010_H06.ab1: 178492-182292 , 040_M16.ab1: 183534-185772 , 051_H05.ab1: 178479-182282

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_260 0.0 - - PREDICTED: uncharacterized protein LOC105642518 [Jatropha curcas]
2 Hb_001504_010 0.0632376045 - - PREDICTED: uncharacterized protein LOC105645377 [Jatropha curcas]
3 Hb_001882_010 0.0718985689 - - -
4 Hb_012438_030 0.0722686039 - - PREDICTED: protein sym-1 [Jatropha curcas]
5 Hb_009476_130 0.0744143619 - - hypothetical protein VITISV_005430 [Vitis vinifera]
6 Hb_001703_040 0.0758261767 - - PREDICTED: uncharacterized protein At1g04910 isoform X2 [Jatropha curcas]
7 Hb_000120_890 0.0778157798 - - PREDICTED: phosphoinositide phosphatase SAC6 [Jatropha curcas]
8 Hb_002686_080 0.0801118512 transcription factor TF Family: PHD PREDICTED: PHD finger protein ING2-like [Jatropha curcas]
9 Hb_016448_010 0.0812099737 - - Protein MYG1, putative [Ricinus communis]
10 Hb_005946_040 0.0829637495 - - PREDICTED: probable protein phosphatase 2C 22 isoform X2 [Jatropha curcas]
11 Hb_007483_070 0.0830027709 - - PREDICTED: intersectin-1 isoform X1 [Populus euphratica]
12 Hb_002876_300 0.0830315449 - - PREDICTED: histidinol-phosphate aminotransferase, chloroplastic-like [Jatropha curcas]
13 Hb_000029_400 0.0830514678 - - PREDICTED: probable 1-acyl-sn-glycerol-3-phosphate acyltransferase 5 isoform X1 [Jatropha curcas]
14 Hb_000003_170 0.0844209688 - - PREDICTED: reticulocalbin-2 [Jatropha curcas]
15 Hb_000579_080 0.08596875 - - PREDICTED: 26S protease regulatory subunit S10B homolog B [Jatropha curcas]
16 Hb_001221_440 0.0866853483 - - PREDICTED: SUMO-activating enzyme subunit 1B-1 isoform X1 [Jatropha curcas]
17 Hb_008304_020 0.0871414963 - - PREDICTED: ATP-dependent RNA helicase DBP2-like [Jatropha curcas]
18 Hb_001227_120 0.0875515088 transcription factor TF Family: C2H2 Histone deacetylase 2a, putative [Ricinus communis]
19 Hb_029695_080 0.0882998315 - - PREDICTED: NAD-dependent protein deacetylase SRT1 [Prunus mume]
20 Hb_014497_100 0.0902239779 - - PREDICTED: AT-rich interactive domain-containing protein 5 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000163_260 Hb_000163_260 Hb_001504_010 Hb_001504_010 Hb_000163_260--Hb_001504_010 Hb_001882_010 Hb_001882_010 Hb_000163_260--Hb_001882_010 Hb_012438_030 Hb_012438_030 Hb_000163_260--Hb_012438_030 Hb_009476_130 Hb_009476_130 Hb_000163_260--Hb_009476_130 Hb_001703_040 Hb_001703_040 Hb_000163_260--Hb_001703_040 Hb_000120_890 Hb_000120_890 Hb_000163_260--Hb_000120_890 Hb_007483_070 Hb_007483_070 Hb_001504_010--Hb_007483_070 Hb_021596_020 Hb_021596_020 Hb_001504_010--Hb_021596_020 Hb_000579_080 Hb_000579_080 Hb_001504_010--Hb_000579_080 Hb_008304_020 Hb_008304_020 Hb_001504_010--Hb_008304_020 Hb_000815_300 Hb_000815_300 Hb_001504_010--Hb_000815_300 Hb_000291_180 Hb_000291_180 Hb_001882_010--Hb_000291_180 Hb_000029_400 Hb_000029_400 Hb_001882_010--Hb_000029_400 Hb_000007_090 Hb_000007_090 Hb_001882_010--Hb_000007_090 Hb_160271_010 Hb_160271_010 Hb_001882_010--Hb_160271_010 Hb_073973_090 Hb_073973_090 Hb_001882_010--Hb_073973_090 Hb_087313_010 Hb_087313_010 Hb_012438_030--Hb_087313_010 Hb_012438_030--Hb_001703_040 Hb_002218_020 Hb_002218_020 Hb_012438_030--Hb_002218_020 Hb_002876_300 Hb_002876_300 Hb_012438_030--Hb_002876_300 Hb_102948_010 Hb_102948_010 Hb_012438_030--Hb_102948_010 Hb_113853_010 Hb_113853_010 Hb_009476_130--Hb_113853_010 Hb_009476_130--Hb_012438_030 Hb_000186_300 Hb_000186_300 Hb_009476_130--Hb_000186_300 Hb_009476_130--Hb_001504_010 Hb_000155_170 Hb_000155_170 Hb_009476_130--Hb_000155_170 Hb_000788_030 Hb_000788_030 Hb_001703_040--Hb_000788_030 Hb_002631_240 Hb_002631_240 Hb_001703_040--Hb_002631_240 Hb_001703_040--Hb_087313_010 Hb_001703_040--Hb_001504_010 Hb_001703_040--Hb_000120_890 Hb_003498_100 Hb_003498_100 Hb_000120_890--Hb_003498_100 Hb_000476_060 Hb_000476_060 Hb_000120_890--Hb_000476_060 Hb_000120_890--Hb_001504_010 Hb_178968_060 Hb_178968_060 Hb_000120_890--Hb_178968_060 Hb_000120_890--Hb_008304_020 Hb_018790_020 Hb_018790_020 Hb_000120_890--Hb_018790_020
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
6.72667 9.40685 29.5887 16.6514 8.13084 8.62655
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
8.9359 10.97 5.99162 10.9841 15.9646

CAGE analysis