Hb_000163_280

Information

Type -
Description -
Location Contig163: 189819-192756
Sequence    

Annotation

kegg
ID rcu:RCOM_1177910
description ubiquitin-protein ligase, putative
nr
ID XP_012082744.1
description PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
swissprot
ID Q9SRX9
description E3 ubiquitin-protein ligase BAH1 OS=Arabidopsis thaliana GN=BAH1 PE=1 SV=1
trembl
ID A0A067JW70
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13918 PE=4 SV=1
Gene Ontology
ID GO:0003824
description probable e3 ubiquitin-protein ligase bah1-like 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14847: 190794-192548
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_280 0.0 - - PREDICTED: probable E3 ubiquitin-protein ligase BAH1-like 1 [Jatropha curcas]
2 Hb_138600_010 0.1344268424 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
3 Hb_030627_040 0.1762342044 - - PREDICTED: probable receptor-like protein kinase At5g59700 [Jatropha curcas]
4 Hb_000201_040 0.1803205848 desease resistance Gene Name: NB-ARC PREDICTED: disease resistance RPP13-like protein 4 [Populus euphratica]
5 Hb_002159_030 0.1885689988 - - AP-1 complex subunit gamma-2, putative [Ricinus communis]
6 Hb_000040_050 0.1926453867 - - PREDICTED: uncharacterized protein LOC102617857 isoform X1 [Citrus sinensis]
7 Hb_000250_080 0.2046095147 - - hypothetical protein B456_003G1510001, partial [Gossypium raimondii]
8 Hb_007603_010 0.2200476381 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000857_050 0.2211413407 - - PREDICTED: protein YLS9 [Jatropha curcas]
10 Hb_031069_020 0.2225011601 - - PREDICTED: protein STRICTOSIDINE SYNTHASE-LIKE 3-like [Jatropha curcas]
11 Hb_009421_030 0.222656821 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
12 Hb_003436_050 0.2230471869 - - arf gtpase-activating protein, putative [Ricinus communis]
13 Hb_005843_040 0.2230485939 - - PREDICTED: uncharacterized protein LOC105639700 [Jatropha curcas]
14 Hb_029510_010 0.2243360432 - - PREDICTED: G-type lectin S-receptor-like serine/threonine-protein kinase At5g24080 [Jatropha curcas]
15 Hb_000001_160 0.2252986168 - - PREDICTED: probable glutamate carboxypeptidase 2 isoform X2 [Jatropha curcas]
16 Hb_003043_060 0.2255276523 - - -
17 Hb_011497_010 0.2262746656 - - PREDICTED: E3 ubiquitin-protein ligase RNF126-like [Jatropha curcas]
18 Hb_000116_280 0.2274200031 - - PREDICTED: epidermal growth factor receptor substrate 15-like 1 [Jatropha curcas]
19 Hb_000101_160 0.2277832986 - - PREDICTED: uncharacterized protein LOC105133607 isoform X1 [Populus euphratica]
20 Hb_006882_010 0.2279358722 - - PREDICTED: dnaJ homolog subfamily B member 1 [Cucumis sativus]

Gene co-expression network

sample Hb_000163_280 Hb_000163_280 Hb_138600_010 Hb_138600_010 Hb_000163_280--Hb_138600_010 Hb_030627_040 Hb_030627_040 Hb_000163_280--Hb_030627_040 Hb_000201_040 Hb_000201_040 Hb_000163_280--Hb_000201_040 Hb_002159_030 Hb_002159_030 Hb_000163_280--Hb_002159_030 Hb_000040_050 Hb_000040_050 Hb_000163_280--Hb_000040_050 Hb_000250_080 Hb_000250_080 Hb_000163_280--Hb_000250_080 Hb_029510_010 Hb_029510_010 Hb_138600_010--Hb_029510_010 Hb_002232_290 Hb_002232_290 Hb_138600_010--Hb_002232_290 Hb_088542_010 Hb_088542_010 Hb_138600_010--Hb_088542_010 Hb_004102_130 Hb_004102_130 Hb_138600_010--Hb_004102_130 Hb_138600_010--Hb_000250_080 Hb_001390_010 Hb_001390_010 Hb_030627_040--Hb_001390_010 Hb_030627_040--Hb_000040_050 Hb_006882_010 Hb_006882_010 Hb_030627_040--Hb_006882_010 Hb_030627_040--Hb_002159_030 Hb_005460_030 Hb_005460_030 Hb_030627_040--Hb_005460_030 Hb_003436_050 Hb_003436_050 Hb_030627_040--Hb_003436_050 Hb_007223_010 Hb_007223_010 Hb_000201_040--Hb_007223_010 Hb_001195_150 Hb_001195_150 Hb_000201_040--Hb_001195_150 Hb_000201_040--Hb_030627_040 Hb_100525_010 Hb_100525_010 Hb_000201_040--Hb_100525_010 Hb_057451_010 Hb_057451_010 Hb_000201_040--Hb_057451_010 Hb_002159_040 Hb_002159_040 Hb_002159_030--Hb_002159_040 Hb_002159_030--Hb_006882_010 Hb_000441_160 Hb_000441_160 Hb_002159_030--Hb_000441_160 Hb_000329_490 Hb_000329_490 Hb_002159_030--Hb_000329_490 Hb_000244_240 Hb_000244_240 Hb_002159_030--Hb_000244_240 Hb_004143_070 Hb_004143_070 Hb_002159_030--Hb_004143_070 Hb_099698_010 Hb_099698_010 Hb_000040_050--Hb_099698_010 Hb_004712_110 Hb_004712_110 Hb_000040_050--Hb_004712_110 Hb_004376_030 Hb_004376_030 Hb_000040_050--Hb_004376_030 Hb_000261_520 Hb_000261_520 Hb_000040_050--Hb_000261_520 Hb_001534_070 Hb_001534_070 Hb_000040_050--Hb_001534_070 Hb_009421_030 Hb_009421_030 Hb_000250_080--Hb_009421_030 Hb_172256_010 Hb_172256_010 Hb_000250_080--Hb_172256_010 Hb_007348_040 Hb_007348_040 Hb_000250_080--Hb_007348_040 Hb_001486_120 Hb_001486_120 Hb_000250_080--Hb_001486_120 Hb_000250_080--Hb_006882_010 Hb_001433_190 Hb_001433_190 Hb_000250_080--Hb_001433_190
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.1551 4.97615 0.931633 3.67498 15.2145 13.4746
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0331635 0.104359 5.03841 1.1047 3.10415

CAGE analysis