Hb_000163_290

Information

Type -
Description -
Location Contig163: 199612-201909
Sequence    

Annotation

kegg
ID rcu:RCOM_1177900
description hypothetical protein
nr
ID XP_012082742.1
description PREDICTED: nucleolar protein 16 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW02
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13917 PE=4 SV=1
Gene Ontology
ID GO:0005634
description nucleolar protein 16

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_14848: 199825-201858
cDNA
(Sanger)
(ID:Location)		 008_C03.ab1: 199887-201859 , 030_L17.ab1: 199988-201858 , 036_O10.ab1: 199825-201859

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000163_290 0.0 - - PREDICTED: nucleolar protein 16 [Jatropha curcas]
2 Hb_006499_010 0.0745457512 - - -
3 Hb_000117_040 0.0877764744 - - 30S ribosomal protein S6A [Hevea brasiliensis]
4 Hb_001518_020 0.095524873 - - PREDICTED: F-box/LRR-repeat protein 13-like isoform X2 [Fragaria vesca subsp. vesca]
5 Hb_003747_240 0.0970943587 transcription factor TF Family: RB conserved hypothetical protein [Ricinus communis]
6 Hb_000371_110 0.1039302545 - - -
7 Hb_001186_060 0.1052457535 - - -
8 Hb_001930_070 0.109612143 - - -
9 Hb_000567_200 0.110259969 - - PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 10 [Jatropha curcas]
10 Hb_000033_050 0.1111608571 - - -
11 Hb_003428_110 0.1134822041 - - ARF2-B: ADP-ribosylation factor 2-B [Gossypium arboreum]
12 Hb_011609_190 0.1203159696 - - 14-3-3 protein 2 [Hevea brasiliensis]
13 Hb_002783_230 0.1220021175 - - neutral/alkaline invertase [Manihot esculenta]
14 Hb_000481_010 0.1251162636 - - PREDICTED: F-box/kelch-repeat protein SKIP6 [Jatropha curcas]
15 Hb_026048_090 0.1258689301 - - conserved hypothetical protein [Ricinus communis]
16 Hb_000953_140 0.1263199689 transcription factor TF Family: Trihelix Duplicated homeodomain-like superfamily protein, putative [Theobroma cacao]
17 Hb_000138_040 0.1268843982 - - PREDICTED: uncharacterized protein LOC105646531 [Jatropha curcas]
18 Hb_011716_040 0.1278784072 - - -
19 Hb_000789_190 0.1281035194 transcription factor TF Family: NAC hypothetical protein JCGZ_07342 [Jatropha curcas]
20 Hb_000176_140 0.1293741104 - - PREDICTED: bystin [Jatropha curcas]

Gene co-expression network

sample Hb_000163_290 Hb_000163_290 Hb_006499_010 Hb_006499_010 Hb_000163_290--Hb_006499_010 Hb_000117_040 Hb_000117_040 Hb_000163_290--Hb_000117_040 Hb_001518_020 Hb_001518_020 Hb_000163_290--Hb_001518_020 Hb_003747_240 Hb_003747_240 Hb_000163_290--Hb_003747_240 Hb_000371_110 Hb_000371_110 Hb_000163_290--Hb_000371_110 Hb_001186_060 Hb_001186_060 Hb_000163_290--Hb_001186_060 Hb_001930_070 Hb_001930_070 Hb_006499_010--Hb_001930_070 Hb_007245_090 Hb_007245_090 Hb_006499_010--Hb_007245_090 Hb_000033_050 Hb_000033_050 Hb_006499_010--Hb_000033_050 Hb_006499_010--Hb_001186_060 Hb_006499_010--Hb_003747_240 Hb_011609_190 Hb_011609_190 Hb_000117_040--Hb_011609_190 Hb_026048_090 Hb_026048_090 Hb_000117_040--Hb_026048_090 Hb_000117_040--Hb_000371_110 Hb_004813_010 Hb_004813_010 Hb_000117_040--Hb_004813_010 Hb_000179_250 Hb_000179_250 Hb_000117_040--Hb_000179_250 Hb_000856_340 Hb_000856_340 Hb_001518_020--Hb_000856_340 Hb_000809_040 Hb_000809_040 Hb_001518_020--Hb_000809_040 Hb_000300_620 Hb_000300_620 Hb_001518_020--Hb_000300_620 Hb_031089_010 Hb_031089_010 Hb_001518_020--Hb_031089_010 Hb_009382_020 Hb_009382_020 Hb_001518_020--Hb_009382_020 Hb_003747_240--Hb_000809_040 Hb_011174_070 Hb_011174_070 Hb_003747_240--Hb_011174_070 Hb_000138_040 Hb_000138_040 Hb_003747_240--Hb_000138_040 Hb_003404_030 Hb_003404_030 Hb_003747_240--Hb_003404_030 Hb_001433_170 Hb_001433_170 Hb_000371_110--Hb_001433_170 Hb_000371_110--Hb_001186_060 Hb_000371_110--Hb_006499_010 Hb_000371_110--Hb_000138_040 Hb_001186_060--Hb_001930_070 Hb_006189_010 Hb_006189_010 Hb_001186_060--Hb_006189_010 Hb_001186_060--Hb_000033_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
473.815 82.1557 11.5959 11.1735 319.806 256.447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
214.627 215.773 258.831 83.1635 3.42857

CAGE analysis