Hb_000164_100

Information

Type -
Description -
Location Contig164: 84072-85378
Sequence    

Annotation

kegg
ID cic:CICLE_v10009865mg
description hypothetical protein
nr
ID XP_012070716.1
description PREDICTED: probable histone H2A.1 [Jatropha curcas]
swissprot
ID Q9C681
description Probable histone H2A.1 OS=Arabidopsis thaliana GN=At1g51060 PE=1 SV=1
trembl
ID A0A067KS35
description Histone H2A OS=Jatropha curcas GN=JCGZ_00793 PE=3 SV=1
Gene Ontology
ID GO:0000786
description probable histone

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15057: 84068-85415
cDNA
(Sanger)
(ID:Location)		 016_L24.ab1: 84208-85415

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_100 0.0 - - PREDICTED: probable histone H2A.1 [Jatropha curcas]
2 Hb_002027_350 0.063628697 - - PREDICTED: U1 small nuclear ribonucleoprotein C-like [Jatropha curcas]
3 Hb_044653_040 0.089646736 transcription factor TF Family: GNAT PREDICTED: N-alpha-acetyltransferase 11 [Jatropha curcas]
4 Hb_000176_020 0.09325383 - - PREDICTED: nuclear pore complex protein NUP43 [Jatropha curcas]
5 Hb_003669_020 0.0966550145 - - PREDICTED: high mobility group nucleosome-binding domain-containing protein 5 [Populus euphratica]
6 Hb_002534_100 0.0999370439 - - PREDICTED: malate dehydrogenase, chloroplastic [Jatropha curcas]
7 Hb_004712_210 0.1030314494 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM50-like [Jatropha curcas]
8 Hb_012565_070 0.1035394224 - - PREDICTED: alpha/beta hydrolase domain-containing protein 17B [Jatropha curcas]
9 Hb_000270_470 0.107179218 transcription factor TF Family: E2F-DP PREDICTED: pentatricopeptide repeat-containing protein At1g74900, mitochondrial [Jatropha curcas]
10 Hb_008225_090 0.107605567 - - PREDICTED: serine/threonine-protein kinase AFC2 isoform X2 [Jatropha curcas]
11 Hb_000580_020 0.1087371814 - - unnamed protein product [Vitis vinifera]
12 Hb_000099_150 0.1093110881 - - PREDICTED: calcium-dependent protein kinase 3 [Jatropha curcas]
13 Hb_001728_040 0.1095802656 - - Aconitase/3-isopropylmalate dehydratase protein [Theobroma cacao]
14 Hb_011618_060 0.1112415824 - - PREDICTED: DNA-repair protein XRCC1 [Jatropha curcas]
15 Hb_000000_230 0.1112501562 transcription factor TF Family: LIM PREDICTED: protein DA1 isoform X1 [Jatropha curcas]
16 Hb_000161_130 0.1118033964 - - PREDICTED: nifU-like protein 2, chloroplastic [Jatropha curcas]
17 Hb_000505_130 0.1130167572 - - PREDICTED: uncharacterized protein LOC105641262 isoform X1 [Jatropha curcas]
18 Hb_002303_020 0.1133689696 - - PREDICTED: lysine--tRNA ligase-like [Gossypium raimondii]
19 Hb_000699_150 0.1144601937 - - PREDICTED: AT-hook motif nuclear-localized protein 14 [Jatropha curcas]
20 Hb_001178_010 0.1144851227 - - PREDICTED: uncharacterized protein LOC105629461 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_100 Hb_000164_100 Hb_002027_350 Hb_002027_350 Hb_000164_100--Hb_002027_350 Hb_044653_040 Hb_044653_040 Hb_000164_100--Hb_044653_040 Hb_000176_020 Hb_000176_020 Hb_000164_100--Hb_000176_020 Hb_003669_020 Hb_003669_020 Hb_000164_100--Hb_003669_020 Hb_002534_100 Hb_002534_100 Hb_000164_100--Hb_002534_100 Hb_004712_210 Hb_004712_210 Hb_000164_100--Hb_004712_210 Hb_000099_150 Hb_000099_150 Hb_002027_350--Hb_000099_150 Hb_011618_060 Hb_011618_060 Hb_002027_350--Hb_011618_060 Hb_002027_350--Hb_003669_020 Hb_002027_350--Hb_002534_100 Hb_000010_190 Hb_000010_190 Hb_002027_350--Hb_000010_190 Hb_000505_130 Hb_000505_130 Hb_044653_040--Hb_000505_130 Hb_005843_140 Hb_005843_140 Hb_044653_040--Hb_005843_140 Hb_044653_040--Hb_003669_020 Hb_044653_040--Hb_002534_100 Hb_000310_020 Hb_000310_020 Hb_044653_040--Hb_000310_020 Hb_002303_020 Hb_002303_020 Hb_044653_040--Hb_002303_020 Hb_171900_090 Hb_171900_090 Hb_000176_020--Hb_171900_090 Hb_001623_270 Hb_001623_270 Hb_000176_020--Hb_001623_270 Hb_001025_090 Hb_001025_090 Hb_000176_020--Hb_001025_090 Hb_000230_460 Hb_000230_460 Hb_000176_020--Hb_000230_460 Hb_000699_150 Hb_000699_150 Hb_000176_020--Hb_000699_150 Hb_000789_320 Hb_000789_320 Hb_000176_020--Hb_000789_320 Hb_003669_020--Hb_005843_140 Hb_006198_070 Hb_006198_070 Hb_003669_020--Hb_006198_070 Hb_003669_020--Hb_000310_020 Hb_011512_070 Hb_011512_070 Hb_003669_020--Hb_011512_070 Hb_003669_020--Hb_000505_130 Hb_002534_100--Hb_004712_210 Hb_002534_100--Hb_002303_020 Hb_010578_080 Hb_010578_080 Hb_002534_100--Hb_010578_080 Hb_000292_100 Hb_000292_100 Hb_002534_100--Hb_000292_100 Hb_062226_130 Hb_062226_130 Hb_002534_100--Hb_062226_130 Hb_004712_210--Hb_002303_020 Hb_004712_210--Hb_010578_080 Hb_004712_210--Hb_044653_040 Hb_009296_070 Hb_009296_070 Hb_004712_210--Hb_009296_070 Hb_002173_070 Hb_002173_070 Hb_004712_210--Hb_002173_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
74.7964 148.102 218.76 115.683 48.568 65.298
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
149.261 243.192 84.4907 127.803 128.617

CAGE analysis