Hb_000164_130

Information

Type -
Description -
Location Contig164: 98448-101119
Sequence    

Annotation

kegg
ID rcu:RCOM_1181730
description Leucoanthocyanidin dioxygenase, putative (EC:1.14.11.23)
nr
ID XP_002528475.1
description Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
swissprot
ID Q39224
description Protein SRG1 OS=Arabidopsis thaliana GN=SRG1 PE=2 SV=1
trembl
ID B9SR56
description Leucoanthocyanidin dioxygenase, putative OS=Ricinus communis GN=RCOM_1181730 PE=3 SV=1
Gene Ontology
ID GO:0016706
description protein srg1-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15060: 98672-98925
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_130 0.0 - - Leucoanthocyanidin dioxygenase, putative [Ricinus communis]
2 Hb_000562_010 0.2044527858 desease resistance Gene Name: NB-ARC putative disease resistance gene NBS-LRR family protein [Populus trichocarpa]
3 Hb_007416_080 0.2061431104 - - -
4 Hb_158296_010 0.2080214159 - - PREDICTED: choline monooxygenase, chloroplastic isoform X3 [Jatropha curcas]
5 Hb_048183_010 0.2146066233 - - nicotinate phosphoribosyltransferase, putative [Ricinus communis]
6 Hb_133648_010 0.2235892834 - - -
7 Hb_001208_020 0.2337463289 - - -
8 Hb_178711_010 0.247719697 - - hypothetical protein PHAVU_003G094000g [Phaseolus vulgaris]
9 Hb_074836_020 0.2528869037 - - unnamed protein product [Vitis vinifera]
10 Hb_053073_010 0.2566810885 - - -
11 Hb_029622_070 0.2571571978 - - -
12 Hb_000577_070 0.2590360157 - - -
13 Hb_008643_020 0.2608225017 - - Cf-4/9 disease resistance-like family protein [Populus trichocarpa]
14 Hb_007441_090 0.2616041465 - - nucleoside diphosphate kinase 1 [Hevea brasiliensis]
15 Hb_091140_020 0.2653809853 - - PREDICTED: uncharacterized protein LOC105640903 [Jatropha curcas]
16 Hb_003925_130 0.2666721629 - - glutathione s-transferase, putative [Ricinus communis]
17 Hb_002984_030 0.2673494056 - - -
18 Hb_001269_090 0.2701886047 - - H(\+)-transporting atpase plant/fungi plasma membrane type, putative [Ricinus communis]
19 Hb_007575_090 0.2737130391 - - putative. proteolipid subunit of vacuolar H+ ATPase, partial [Zea mays]
20 Hb_025194_070 0.2746755675 - - PREDICTED: ACT domain-containing protein ACR4-like [Jatropha curcas]

Gene co-expression network

sample Hb_000164_130 Hb_000164_130 Hb_000562_010 Hb_000562_010 Hb_000164_130--Hb_000562_010 Hb_007416_080 Hb_007416_080 Hb_000164_130--Hb_007416_080 Hb_158296_010 Hb_158296_010 Hb_000164_130--Hb_158296_010 Hb_048183_010 Hb_048183_010 Hb_000164_130--Hb_048183_010 Hb_133648_010 Hb_133648_010 Hb_000164_130--Hb_133648_010 Hb_001208_020 Hb_001208_020 Hb_000164_130--Hb_001208_020 Hb_000562_010--Hb_158296_010 Hb_000562_010--Hb_001208_020 Hb_000562_010--Hb_007416_080 Hb_001248_180 Hb_001248_180 Hb_000562_010--Hb_001248_180 Hb_000562_010--Hb_133648_010 Hb_007416_080--Hb_048183_010 Hb_007416_080--Hb_158296_010 Hb_007416_080--Hb_133648_010 Hb_007416_080--Hb_001208_020 Hb_158296_010--Hb_133648_010 Hb_158296_010--Hb_001208_020 Hb_000244_140 Hb_000244_140 Hb_158296_010--Hb_000244_140 Hb_048183_010--Hb_133648_010 Hb_072290_010 Hb_072290_010 Hb_048183_010--Hb_072290_010 Hb_001708_010 Hb_001708_010 Hb_048183_010--Hb_001708_010 Hb_178711_010 Hb_178711_010 Hb_048183_010--Hb_178711_010 Hb_097783_010 Hb_097783_010 Hb_133648_010--Hb_097783_010 Hb_133648_010--Hb_072290_010 Hb_053073_010 Hb_053073_010 Hb_001208_020--Hb_053073_010 Hb_005951_010 Hb_005951_010 Hb_001208_020--Hb_005951_010 Hb_000134_100 Hb_000134_100 Hb_001208_020--Hb_000134_100 Hb_003894_090 Hb_003894_090 Hb_001208_020--Hb_003894_090
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.898643 0.865151 3.30717 0 1.03686
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0781037 0.061439 0 0.0122987 0.191061

CAGE analysis