Hb_000164_150

Information

Type -
Description -
Location Contig164: 112147-119007
Sequence    

Annotation

kegg
ID rcu:RCOM_0180410
description serine/threonine-specific protein kinase, putative (EC:2.7.11.25)
nr
ID XP_002522815.1
description serine/threonine-specific protein kinase, putative [Ricinus communis]
swissprot
ID Q9LFV3
description Probable leucine-rich repeat receptor-like serine/threonine-protein kinase At5g15730 OS=Arabidopsis thaliana GN=At5g15730 PE=2 SV=1
trembl
ID B9S9Z6
description Serine/threonine-specific protein kinase, putative OS=Ricinus communis GN=RCOM_0180410 PE=4 SV=1
Gene Ontology
ID GO:0004672
description probable leucine-rich repeat receptor-like serine threonine-protein kinase at5g15730

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_150 0.0 - - serine/threonine-specific protein kinase, putative [Ricinus communis]
2 Hb_148346_010 0.1588149103 - - -
3 Hb_006831_080 0.1647589635 - - PREDICTED: uncharacterized protein LOC105642126 [Jatropha curcas]
4 Hb_083493_010 0.1692504465 - - Disease resistance protein RPS5, putative [Ricinus communis]
5 Hb_001882_150 0.173909264 transcription factor TF Family: mTERF -
6 Hb_000085_380 0.1775536313 - - conserved hypothetical protein [Ricinus communis]
7 Hb_000685_020 0.1785315648 - - PREDICTED: long chain acyl-CoA synthetase 4-like [Jatropha curcas]
8 Hb_136033_010 0.1797127499 - - PREDICTED: putative serine/threonine-protein kinase-like protein CCR3 [Gossypium raimondii]
9 Hb_000424_100 0.1808740271 desease resistance Gene Name: G-alpha GTP-binding protein (p) alpha subunit, gpa1, putative [Ricinus communis]
10 Hb_000203_070 0.1838027105 - - PREDICTED: uncharacterized protein LOC105649674 [Jatropha curcas]
11 Hb_000120_310 0.1841725842 - - Gibberellin 3-beta-dioxygenase, putative [Ricinus communis]
12 Hb_012308_050 0.1853477608 transcription factor TF Family: AUX/IAA PREDICTED: auxin-responsive protein IAA9-like [Jatropha curcas]
13 Hb_001178_080 0.1877168467 - - PREDICTED: protein kinase PVPK-1 [Jatropha curcas]
14 Hb_000936_090 0.1888564855 - - PREDICTED: putative E3 ubiquitin-protein ligase RING1a isoform X2 [Jatropha curcas]
15 Hb_000679_260 0.1897910283 - - conserved hypothetical protein [Ricinus communis]
16 Hb_002375_060 0.1926556792 - - PREDICTED: uncharacterized protein LOC105628271 [Jatropha curcas]
17 Hb_000062_490 0.1927222979 - - PREDICTED: lipoxygenase 6, chloroplastic [Jatropha curcas]
18 Hb_001522_040 0.1930534829 - - BRASSINOSTEROID INSENSITIVE 1-associated receptor kinase 1 precursor, putative [Ricinus communis]
19 Hb_001596_020 0.1931574288 - - hypothetical protein CICLE_v10014140mg [Citrus clementina]
20 Hb_001832_210 0.1956427258 - - PREDICTED: venom phosphodiesterase 2 [Jatropha curcas]

Gene co-expression network

sample Hb_000164_150 Hb_000164_150 Hb_148346_010 Hb_148346_010 Hb_000164_150--Hb_148346_010 Hb_006831_080 Hb_006831_080 Hb_000164_150--Hb_006831_080 Hb_083493_010 Hb_083493_010 Hb_000164_150--Hb_083493_010 Hb_001882_150 Hb_001882_150 Hb_000164_150--Hb_001882_150 Hb_000085_380 Hb_000085_380 Hb_000164_150--Hb_000085_380 Hb_000685_020 Hb_000685_020 Hb_000164_150--Hb_000685_020 Hb_002539_050 Hb_002539_050 Hb_148346_010--Hb_002539_050 Hb_004678_030 Hb_004678_030 Hb_148346_010--Hb_004678_030 Hb_000654_050 Hb_000654_050 Hb_148346_010--Hb_000654_050 Hb_010315_100 Hb_010315_100 Hb_148346_010--Hb_010315_100 Hb_000003_740 Hb_000003_740 Hb_148346_010--Hb_000003_740 Hb_148346_010--Hb_001882_150 Hb_001596_020 Hb_001596_020 Hb_006831_080--Hb_001596_020 Hb_001856_170 Hb_001856_170 Hb_006831_080--Hb_001856_170 Hb_000120_310 Hb_000120_310 Hb_006831_080--Hb_000120_310 Hb_004586_240 Hb_004586_240 Hb_006831_080--Hb_004586_240 Hb_001141_230 Hb_001141_230 Hb_006831_080--Hb_001141_230 Hb_001832_210 Hb_001832_210 Hb_006831_080--Hb_001832_210 Hb_001688_070 Hb_001688_070 Hb_083493_010--Hb_001688_070 Hb_009745_010 Hb_009745_010 Hb_083493_010--Hb_009745_010 Hb_000203_070 Hb_000203_070 Hb_083493_010--Hb_000203_070 Hb_012308_050 Hb_012308_050 Hb_083493_010--Hb_012308_050 Hb_000363_180 Hb_000363_180 Hb_083493_010--Hb_000363_180 Hb_187021_010 Hb_187021_010 Hb_083493_010--Hb_187021_010 Hb_001882_150--Hb_002539_050 Hb_001882_150--Hb_083493_010 Hb_001882_150--Hb_000003_740 Hb_005694_180 Hb_005694_180 Hb_001882_150--Hb_005694_180 Hb_002833_020 Hb_002833_020 Hb_000085_380--Hb_002833_020 Hb_000318_170 Hb_000318_170 Hb_000085_380--Hb_000318_170 Hb_001221_390 Hb_001221_390 Hb_000085_380--Hb_001221_390 Hb_001008_110 Hb_001008_110 Hb_000085_380--Hb_001008_110 Hb_033234_010 Hb_033234_010 Hb_000085_380--Hb_033234_010 Hb_003106_110 Hb_003106_110 Hb_000085_380--Hb_003106_110 Hb_002685_160 Hb_002685_160 Hb_000685_020--Hb_002685_160 Hb_136033_010 Hb_136033_010 Hb_000685_020--Hb_136033_010 Hb_139461_010 Hb_139461_010 Hb_000685_020--Hb_139461_010 Hb_152980_020 Hb_152980_020 Hb_000685_020--Hb_152980_020 Hb_007483_120 Hb_007483_120 Hb_000685_020--Hb_007483_120 Hb_000120_320 Hb_000120_320 Hb_000685_020--Hb_000120_320
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.531465 2.18475 2.38304 3.24401 0.0572361 0.778773
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 2.52973 0.771169

CAGE analysis