Hb_000164_160

Information

Type transcription factor
Description TF Family: GRAS
Location Contig164: 127513-130972
Sequence    

Annotation

kegg
ID tcc:TCM_031132
description GRAS family transcription factor isoform 1
nr
ID XP_012070709.1
description PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
swissprot
ID Q69VG1
description Chitin-inducible gibberellin-responsive protein 1 OS=Oryza sativa subsp. japonica GN=CIGR1 PE=2 SV=1
trembl
ID A0A067L3E6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00787 PE=4 SV=1
Gene Ontology
ID GO:0006351
description scarecrow-like protein 21

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15065: 127580-131156 , PASA_asmbl_15067: 128198-128469
cDNA
(Sanger)
(ID:Location)		 032_C07.ab1: 127580-129800

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000164_160 0.0 transcription factor TF Family: GRAS PREDICTED: chitin-inducible gibberellin-responsive protein 1-like isoform X1 [Jatropha curcas]
2 Hb_005054_330 0.0768685791 - - PREDICTED: nematode resistance protein-like HSPRO2 [Jatropha curcas]
3 Hb_002542_030 0.080033294 transcription factor TF Family: Tify JAZ7 [Hevea brasiliensis]
4 Hb_004899_010 0.0807031679 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF017 [Jatropha curcas]
5 Hb_002289_180 0.095548922 - - PREDICTED: probable galactinol--sucrose galactosyltransferase 2 [Nelumbo nucifera]
6 Hb_000627_130 0.0992300578 - - Polcalcin Jun o, putative [Ricinus communis]
7 Hb_008637_020 0.0998275845 - - conserved hypothetical protein [Ricinus communis]
8 Hb_000997_130 0.1003622735 - - DNA binding protein, putative [Ricinus communis]
9 Hb_004612_020 0.1011137608 - - PREDICTED: tetraspanin-8-like [Populus euphratica]
10 Hb_003207_230 0.102529765 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1B-like [Jatropha curcas]
11 Hb_007546_010 0.1056551652 - - unnamed protein product [Vitis vinifera]
12 Hb_112703_010 0.1092708233 - - PREDICTED: cytochrome P450 CYP72A219-like [Prunus mume]
13 Hb_007858_020 0.1111961591 - - PREDICTED: probable protein phosphatase 2C 25 [Jatropha curcas]
14 Hb_032071_010 0.1124517861 - - hypothetical protein EUGRSUZ_J02969 [Eucalyptus grandis]
15 Hb_124953_010 0.1128806966 - - hypothetical protein RCOM_1314600 [Ricinus communis]
16 Hb_167186_010 0.1135085318 - - cation-transporting atpase plant, putative [Ricinus communis]
17 Hb_099188_010 0.1135203873 - - PREDICTED: probable receptor-like protein kinase At1g67000 [Jatropha curcas]
18 Hb_002066_050 0.1138335928 transcription factor TF Family: ERF PREDICTED: ethylene-responsive transcription factor ERF109-like [Jatropha curcas]
19 Hb_000808_090 0.1191550586 - - PREDICTED: uncharacterized protein LOC105647449 [Jatropha curcas]
20 Hb_001153_250 0.1201605309 transcription factor TF Family: ERF PREDICTED: dehydration-responsive element-binding protein 1A-like [Jatropha curcas]

Gene co-expression network

sample Hb_000164_160 Hb_000164_160 Hb_005054_330 Hb_005054_330 Hb_000164_160--Hb_005054_330 Hb_002542_030 Hb_002542_030 Hb_000164_160--Hb_002542_030 Hb_004899_010 Hb_004899_010 Hb_000164_160--Hb_004899_010 Hb_002289_180 Hb_002289_180 Hb_000164_160--Hb_002289_180 Hb_000627_130 Hb_000627_130 Hb_000164_160--Hb_000627_130 Hb_008637_020 Hb_008637_020 Hb_000164_160--Hb_008637_020 Hb_007858_020 Hb_007858_020 Hb_005054_330--Hb_007858_020 Hb_167186_010 Hb_167186_010 Hb_005054_330--Hb_167186_010 Hb_000959_240 Hb_000959_240 Hb_005054_330--Hb_000959_240 Hb_008725_220 Hb_008725_220 Hb_005054_330--Hb_008725_220 Hb_003207_230 Hb_003207_230 Hb_005054_330--Hb_003207_230 Hb_002542_030--Hb_005054_330 Hb_002542_030--Hb_008637_020 Hb_002542_030--Hb_003207_230 Hb_099188_010 Hb_099188_010 Hb_002542_030--Hb_099188_010 Hb_124953_010 Hb_124953_010 Hb_002542_030--Hb_124953_010 Hb_004612_020 Hb_004612_020 Hb_004899_010--Hb_004612_020 Hb_004899_010--Hb_005054_330 Hb_001153_250 Hb_001153_250 Hb_004899_010--Hb_001153_250 Hb_004899_010--Hb_000959_240 Hb_008651_010 Hb_008651_010 Hb_004899_010--Hb_008651_010 Hb_112703_010 Hb_112703_010 Hb_002289_180--Hb_112703_010 Hb_000997_130 Hb_000997_130 Hb_002289_180--Hb_000997_130 Hb_032071_010 Hb_032071_010 Hb_002289_180--Hb_032071_010 Hb_002289_180--Hb_008651_010 Hb_002289_180--Hb_099188_010 Hb_002289_180--Hb_008637_020 Hb_000627_130--Hb_007858_020 Hb_000627_130--Hb_124953_010 Hb_029664_010 Hb_029664_010 Hb_000627_130--Hb_029664_010 Hb_000627_130--Hb_001153_250 Hb_109591_010 Hb_109591_010 Hb_000627_130--Hb_109591_010 Hb_000627_130--Hb_005054_330 Hb_128851_020 Hb_128851_020 Hb_008637_020--Hb_128851_020 Hb_008637_020--Hb_099188_010 Hb_164577_010 Hb_164577_010 Hb_008637_020--Hb_164577_010 Hb_001511_200 Hb_001511_200 Hb_008637_020--Hb_001511_200
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.206914 336.229 279.681 101.333 0.218012 0.292447
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.52527 2.62387 0.614965 1.96886 4.92437

CAGE analysis