Hb_000165_010

Information

Type -
Description -
Location Contig165: 3749-4414
Sequence    

Annotation

kegg
ID pop:POPTR_0010s19120g
description POPTRDRAFT_226903; hypothetical protein
nr
ID XP_002315136.2
description hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
swissprot
ID Q8S8E3
description Abscisic acid receptor PYL6 OS=Arabidopsis thaliana GN=PYL6 PE=1 SV=1
trembl
ID B9HSJ1
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0010s19120g PE=4 SV=2
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15184: 3576-4879
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_010 0.0 - - hypothetical protein POPTR_0010s19120g [Populus trichocarpa]
2 Hb_003504_020 0.11391399 - - PREDICTED: uncharacterized protein LOC105647732 [Jatropha curcas]
3 Hb_002053_060 0.1235231472 - - PREDICTED: zinc finger A20 and AN1 domain-containing stress-associated protein 1 [Jatropha curcas]
4 Hb_001232_130 0.1320181988 transcription factor TF Family: Trihelix PREDICTED: trihelix transcription factor ASIL1-like [Jatropha curcas]
5 Hb_019654_090 0.1350194958 - - PREDICTED: pentatricopeptide repeat-containing protein At2g33680 [Jatropha curcas]
6 Hb_002027_400 0.1370106284 - - PREDICTED: auxin response factor 23-like [Jatropha curcas]
7 Hb_007429_030 0.1373815184 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 isoform X1 [Jatropha curcas]
8 Hb_007382_150 0.1402150874 - - PREDICTED: GDT1-like protein 4 [Jatropha curcas]
9 Hb_002759_230 0.1427032218 - - PREDICTED: vacuolar protein sorting-associated protein 25 [Jatropha curcas]
10 Hb_002909_060 0.1427918981 - - 3-5 exonuclease, putative [Ricinus communis]
11 Hb_005505_020 0.143691222 - - Potassium channel AKT1, putative [Ricinus communis]
12 Hb_005539_240 0.1442193948 - - hypothetical protein MIMGU_mgv1a0220462mg, partial [Erythranthe guttata]
13 Hb_003943_030 0.1448965932 - - PREDICTED: pentatricopeptide repeat-containing protein At1g32415, mitochondrial [Jatropha curcas]
14 Hb_000230_380 0.145332811 - - PREDICTED: F-box/kelch-repeat protein At3g06240-like isoform X1 [Jatropha curcas]
15 Hb_004951_040 0.146040122 - - PREDICTED: pentatricopeptide repeat-containing protein At1g31790-like [Jatropha curcas]
16 Hb_000196_080 0.1487997788 transcription factor TF Family: bHLH PREDICTED: transcription factor bHLH79-like isoform X1 [Jatropha curcas]
17 Hb_003579_030 0.1490113923 - - phosphatase 2C family protein [Populus trichocarpa]
18 Hb_000260_310 0.1507428406 - - PREDICTED: uncharacterized protein LOC105649060 [Jatropha curcas]
19 Hb_021409_160 0.1513517362 - - hypothetical protein POPTR_0001s11040g [Populus trichocarpa]
20 Hb_020301_040 0.1543790519 - - PREDICTED: mitochondrial substrate carrier family protein P [Jatropha curcas]

Gene co-expression network

sample Hb_000165_010 Hb_000165_010 Hb_003504_020 Hb_003504_020 Hb_000165_010--Hb_003504_020 Hb_002053_060 Hb_002053_060 Hb_000165_010--Hb_002053_060 Hb_001232_130 Hb_001232_130 Hb_000165_010--Hb_001232_130 Hb_019654_090 Hb_019654_090 Hb_000165_010--Hb_019654_090 Hb_002027_400 Hb_002027_400 Hb_000165_010--Hb_002027_400 Hb_007429_030 Hb_007429_030 Hb_000165_010--Hb_007429_030 Hb_007382_150 Hb_007382_150 Hb_003504_020--Hb_007382_150 Hb_003504_020--Hb_007429_030 Hb_000141_020 Hb_000141_020 Hb_003504_020--Hb_000141_020 Hb_000125_030 Hb_000125_030 Hb_003504_020--Hb_000125_030 Hb_024714_060 Hb_024714_060 Hb_003504_020--Hb_024714_060 Hb_003579_030 Hb_003579_030 Hb_003504_020--Hb_003579_030 Hb_016604_020 Hb_016604_020 Hb_002053_060--Hb_016604_020 Hb_002759_230 Hb_002759_230 Hb_002053_060--Hb_002759_230 Hb_003106_050 Hb_003106_050 Hb_002053_060--Hb_003106_050 Hb_000099_060 Hb_000099_060 Hb_002053_060--Hb_000099_060 Hb_002909_060 Hb_002909_060 Hb_002053_060--Hb_002909_060 Hb_002182_060 Hb_002182_060 Hb_002053_060--Hb_002182_060 Hb_002307_090 Hb_002307_090 Hb_001232_130--Hb_002307_090 Hb_001946_320 Hb_001946_320 Hb_001232_130--Hb_001946_320 Hb_000749_250 Hb_000749_250 Hb_001232_130--Hb_000749_250 Hb_003943_030 Hb_003943_030 Hb_001232_130--Hb_003943_030 Hb_010589_040 Hb_010589_040 Hb_001232_130--Hb_010589_040 Hb_002936_050 Hb_002936_050 Hb_001232_130--Hb_002936_050 Hb_000019_060 Hb_000019_060 Hb_019654_090--Hb_000019_060 Hb_002056_060 Hb_002056_060 Hb_019654_090--Hb_002056_060 Hb_034406_020 Hb_034406_020 Hb_019654_090--Hb_034406_020 Hb_000072_080 Hb_000072_080 Hb_019654_090--Hb_000072_080 Hb_007645_080 Hb_007645_080 Hb_019654_090--Hb_007645_080 Hb_004951_040 Hb_004951_040 Hb_019654_090--Hb_004951_040 Hb_000012_130 Hb_000012_130 Hb_002027_400--Hb_000012_130 Hb_001160_030 Hb_001160_030 Hb_002027_400--Hb_001160_030 Hb_002027_400--Hb_002759_230 Hb_002027_400--Hb_002909_060 Hb_001439_170 Hb_001439_170 Hb_002027_400--Hb_001439_170 Hb_028487_030 Hb_028487_030 Hb_002027_400--Hb_028487_030 Hb_007429_030--Hb_003943_030 Hb_025214_130 Hb_025214_130 Hb_007429_030--Hb_025214_130 Hb_004414_050 Hb_004414_050 Hb_007429_030--Hb_004414_050 Hb_007429_030--Hb_019654_090 Hb_001959_160 Hb_001959_160 Hb_007429_030--Hb_001959_160
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
87.1496 56.7108 17.3414 9.55872 49.5076 35.5943
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
161.74 195.688 223.588 17.1343 27.6115

CAGE analysis