Hb_000165_020

Information

Type -
Description -
Location Contig165: 14820-17706
Sequence    

Annotation

kegg
ID rcu:RCOM_0687400
description hypothetical protein
nr
ID XP_012086714.1
description PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
swissprot
ID F4IH21
description Protein trichome birefringence-like 33 OS=Arabidopsis thaliana GN=TBL33 PE=2 SV=1
trembl
ID A0A067LJA3
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01200 PE=4 SV=1
Gene Ontology
ID GO:0046872
description protein trichome birefringence-like 33

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15185: 14934-17668
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_020 0.0 - - PREDICTED: protein trichome birefringence-like 33 [Jatropha curcas]
2 Hb_147745_010 0.0800790768 - - PREDICTED: uncharacterized protein LOC105639149 [Jatropha curcas]
3 Hb_150486_010 0.1153786176 - - hypothetical protein CICLE_v100116733mg, partial [Citrus clementina]
4 Hb_000236_230 0.1495996474 - - PREDICTED: E3 ubiquitin-protein ligase At4g11680 isoform X2 [Jatropha curcas]
5 Hb_001214_040 0.1555757083 - - PREDICTED: protein trichome birefringence-like 3 [Jatropha curcas]
6 Hb_001366_110 0.165610521 - - conserved hypothetical protein [Ricinus communis]
7 Hb_116701_010 0.1780962556 - - hypothetical protein POPTR_0005s19410g [Populus trichocarpa]
8 Hb_007311_050 0.180286655 - - conserved hypothetical protein [Ricinus communis]
9 Hb_000226_120 0.180861565 - - PREDICTED: heparanase-like protein 3 isoform X1 [Jatropha curcas]
10 Hb_001541_060 0.1847907752 - - conserved hypothetical protein [Ricinus communis]
11 Hb_000428_040 0.1850536477 - - PREDICTED: protein trichome birefringence-like 31 [Populus euphratica]
12 Hb_143748_010 0.1945251339 - - PREDICTED: uncharacterized protein LOC105648045 isoform X1 [Jatropha curcas]
13 Hb_000130_350 0.1964999261 - - PREDICTED: protein IQ-DOMAIN 1-like [Jatropha curcas]
14 Hb_000108_180 0.1995075054 - - PREDICTED: uncharacterized protein LOC105630021 [Jatropha curcas]
15 Hb_000054_010 0.2006201238 - - PREDICTED: uncharacterized protein At1g04910 isoform X1 [Jatropha curcas]
16 Hb_004627_010 0.2027651985 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000482_080 0.2027886126 - - PREDICTED: uncharacterized protein LOC105638144 [Jatropha curcas]
18 Hb_000176_080 0.2097056009 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g30520 [Jatropha curcas]
19 Hb_005183_130 0.210700112 - - glycogenin, putative [Ricinus communis]
20 Hb_000622_190 0.2119049787 - - PREDICTED: uncharacterized protein LOC105642890 [Jatropha curcas]

Gene co-expression network

sample Hb_000165_020 Hb_000165_020 Hb_147745_010 Hb_147745_010 Hb_000165_020--Hb_147745_010 Hb_150486_010 Hb_150486_010 Hb_000165_020--Hb_150486_010 Hb_000236_230 Hb_000236_230 Hb_000165_020--Hb_000236_230 Hb_001214_040 Hb_001214_040 Hb_000165_020--Hb_001214_040 Hb_001366_110 Hb_001366_110 Hb_000165_020--Hb_001366_110 Hb_116701_010 Hb_116701_010 Hb_000165_020--Hb_116701_010 Hb_000226_120 Hb_000226_120 Hb_147745_010--Hb_000226_120 Hb_147745_010--Hb_000236_230 Hb_147745_010--Hb_150486_010 Hb_147745_010--Hb_001366_110 Hb_000300_410 Hb_000300_410 Hb_147745_010--Hb_000300_410 Hb_001541_060 Hb_001541_060 Hb_150486_010--Hb_001541_060 Hb_000108_180 Hb_000108_180 Hb_150486_010--Hb_000108_180 Hb_025645_020 Hb_025645_020 Hb_150486_010--Hb_025645_020 Hb_150486_010--Hb_000236_230 Hb_150486_010--Hb_001366_110 Hb_000428_040 Hb_000428_040 Hb_000236_230--Hb_000428_040 Hb_000236_230--Hb_001366_110 Hb_000251_120 Hb_000251_120 Hb_000236_230--Hb_000251_120 Hb_000236_230--Hb_116701_010 Hb_000130_350 Hb_000130_350 Hb_000236_230--Hb_000130_350 Hb_005183_130 Hb_005183_130 Hb_000236_230--Hb_005183_130 Hb_001141_250 Hb_001141_250 Hb_001214_040--Hb_001141_250 Hb_008762_010 Hb_008762_010 Hb_001214_040--Hb_008762_010 Hb_001214_040--Hb_000130_350 Hb_001214_040--Hb_000236_230 Hb_001214_040--Hb_116701_010 Hb_158092_050 Hb_158092_050 Hb_001366_110--Hb_158092_050 Hb_001366_110--Hb_116701_010 Hb_001366_110--Hb_000130_350 Hb_001366_110--Hb_000108_180 Hb_001366_110--Hb_001541_060 Hb_116701_010--Hb_000130_350 Hb_116701_010--Hb_158092_050 Hb_116701_010--Hb_000428_040 Hb_116701_010--Hb_008762_010 Hb_000173_240 Hb_000173_240 Hb_116701_010--Hb_000173_240
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.87427 4.15103 7.8535 156.581 6.52771 7.39123
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.85437 2.85552 15.4769 0.891732 63.5118

CAGE analysis