Hb_000165_030

Information

Type -
Description -
Location Contig165: 22057-29002
Sequence    

Annotation

kegg
ID pop:POPTR_0008s07320g
description POPTRDRAFT_765621; hypothetical protein
nr
ID XP_012086725.1
description PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067L8E1
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01201 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15186: 22237-25687 , PASA_asmbl_15188: 28813-29036
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_030 0.0 - - PREDICTED: uncharacterized protein LOC105645673 isoform X1 [Jatropha curcas]
2 Hb_000162_090 0.0732418658 - - PREDICTED: methyltransferase-like protein 16 isoform X1 [Jatropha curcas]
3 Hb_000749_150 0.0743993228 - - -
4 Hb_002997_170 0.0794283062 - - PREDICTED: uncharacterized protein LOC105131887 [Populus euphratica]
5 Hb_000905_190 0.0795162289 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm7 [Elaeis guineensis]
6 Hb_000156_140 0.0807510834 - - Ribosomal protein L18ae/LX family protein [Theobroma cacao]
7 Hb_109842_010 0.0844291724 - - PREDICTED: uncharacterized protein LOC105647554 isoform X2 [Jatropha curcas]
8 Hb_001823_100 0.0862584145 - - PREDICTED: probable ribosome biogenesis protein RLP24 [Vitis vinifera]
9 Hb_012340_030 0.0877229171 - - PREDICTED: ankyrin repeat and SAM domain-containing protein 6 [Jatropha curcas]
10 Hb_004204_200 0.0898341634 - - PREDICTED: LYR motif-containing protein 4 [Jatropha curcas]
11 Hb_001981_070 0.090153913 - - tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase, putative [Ricinus communis]
12 Hb_000803_150 0.090230629 - - PREDICTED: uncharacterized protein LOC105648311 isoform X2 [Jatropha curcas]
13 Hb_003038_030 0.0939339536 - - PREDICTED: anaphase-promoting complex subunit 10 [Cucumis melo]
14 Hb_003642_060 0.0950480049 - - hypothetical protein RCOM_1189860 [Ricinus communis]
15 Hb_004852_030 0.0954683396 - - PREDICTED: uncharacterized protein LOC105639923 [Jatropha curcas]
16 Hb_003609_040 0.0956461218 - - PREDICTED: uncharacterized protein LOC105632878 [Jatropha curcas]
17 Hb_009411_020 0.0959881486 - - PREDICTED: eukaryotic translation initiation factor 3 subunit E [Populus euphratica]
18 Hb_004206_010 0.096789234 - - PREDICTED: uncharacterized protein LOC103321196 [Prunus mume]
19 Hb_000977_130 0.0975268158 - - PREDICTED: U6 snRNA-associated Sm-like protein LSm6 [Populus euphratica]
20 Hb_000625_020 0.0983419792 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000165_030 Hb_000165_030 Hb_000162_090 Hb_000162_090 Hb_000165_030--Hb_000162_090 Hb_000749_150 Hb_000749_150 Hb_000165_030--Hb_000749_150 Hb_002997_170 Hb_002997_170 Hb_000165_030--Hb_002997_170 Hb_000905_190 Hb_000905_190 Hb_000165_030--Hb_000905_190 Hb_000156_140 Hb_000156_140 Hb_000165_030--Hb_000156_140 Hb_109842_010 Hb_109842_010 Hb_000165_030--Hb_109842_010 Hb_001511_020 Hb_001511_020 Hb_000162_090--Hb_001511_020 Hb_003642_060 Hb_003642_060 Hb_000162_090--Hb_003642_060 Hb_000803_150 Hb_000803_150 Hb_000162_090--Hb_000803_150 Hb_000089_220 Hb_000089_220 Hb_000162_090--Hb_000089_220 Hb_001913_010 Hb_001913_010 Hb_000162_090--Hb_001913_010 Hb_004204_200 Hb_004204_200 Hb_000749_150--Hb_004204_200 Hb_010608_010 Hb_010608_010 Hb_000749_150--Hb_010608_010 Hb_000749_150--Hb_000803_150 Hb_000204_040 Hb_000204_040 Hb_000749_150--Hb_000204_040 Hb_000120_500 Hb_000120_500 Hb_000749_150--Hb_000120_500 Hb_000977_130 Hb_000977_130 Hb_002997_170--Hb_000977_130 Hb_002997_170--Hb_000905_190 Hb_001741_140 Hb_001741_140 Hb_002997_170--Hb_001741_140 Hb_000997_020 Hb_000997_020 Hb_002997_170--Hb_000997_020 Hb_168918_020 Hb_168918_020 Hb_002997_170--Hb_168918_020 Hb_012340_030 Hb_012340_030 Hb_002997_170--Hb_012340_030 Hb_000905_190--Hb_003642_060 Hb_001214_130 Hb_001214_130 Hb_000905_190--Hb_001214_130 Hb_005928_060 Hb_005928_060 Hb_000905_190--Hb_005928_060 Hb_003453_020 Hb_003453_020 Hb_000905_190--Hb_003453_020 Hb_000905_190--Hb_001741_140 Hb_009411_020 Hb_009411_020 Hb_000156_140--Hb_009411_020 Hb_002774_070 Hb_002774_070 Hb_000156_140--Hb_002774_070 Hb_000175_390 Hb_000175_390 Hb_000156_140--Hb_000175_390 Hb_000156_140--Hb_004204_200 Hb_000156_140--Hb_000997_020 Hb_005306_110 Hb_005306_110 Hb_109842_010--Hb_005306_110 Hb_109842_010--Hb_009411_020 Hb_001504_150 Hb_001504_150 Hb_109842_010--Hb_001504_150 Hb_000625_020 Hb_000625_020 Hb_109842_010--Hb_000625_020 Hb_168707_030 Hb_168707_030 Hb_109842_010--Hb_168707_030
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
23.0732 5.83069 7.78789 5.70869 19.0851 28.663
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
12.4813 17.8859 15.9304 2.73288 2.98477

CAGE analysis