Hb_000165_040

Information

Type -
Description -
Location Contig165: 33070-37782
Sequence    

Annotation

kegg
ID rcu:RCOM_0687340
description dead box ATP-dependent RNA helicase, putative
nr
ID KDP44706.1
description hypothetical protein JCGZ_01206 [Jatropha curcas]
swissprot
ID Q9FLB0
description DEAD-box ATP-dependent RNA helicase 18 OS=Arabidopsis thaliana GN=RH18 PE=2 SV=1
trembl
ID A0A067L8F8
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01206 PE=3 SV=1
Gene Ontology
ID GO:0003676
description dead-box atp-dependent rna helicase 18

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15189: 33064-37711
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_040 0.0 - - hypothetical protein JCGZ_01206 [Jatropha curcas]
2 Hb_005867_070 0.0556675108 - - DNA binding protein, putative [Ricinus communis]
3 Hb_000441_120 0.0571407442 - - PREDICTED: DNA-damage-repair/toleration protein DRT111, chloroplastic isoform X1 [Jatropha curcas]
4 Hb_000006_040 0.0586469919 - - dead box ATP-dependent RNA helicase, putative [Ricinus communis]
5 Hb_000935_010 0.0630556481 - - PREDICTED: DEAD-box ATP-dependent RNA helicase 16 [Jatropha curcas]
6 Hb_000174_170 0.0640096316 - - PREDICTED: splicing factor U2AF-associated protein 2 isoform X1 [Jatropha curcas]
7 Hb_001021_150 0.0656788618 - - PREDICTED: metal tolerance protein C1 [Jatropha curcas]
8 Hb_000696_230 0.0666811839 - - hypothetical protein POPTR_0005s11280g [Populus trichocarpa]
9 Hb_006483_110 0.0714787489 - - PREDICTED: RNA-binding protein Musashi homolog 1 [Jatropha curcas]
10 Hb_183510_020 0.0715635262 - - coated vesicle membrane protein, putative [Ricinus communis]
11 Hb_002592_060 0.0720592799 - - conserved hypothetical protein [Ricinus communis]
12 Hb_033642_090 0.0723067845 - - conserved hypothetical protein [Ricinus communis]
13 Hb_003847_130 0.0739476092 - - cytochrome C oxidase assembly protein cox11, putative [Ricinus communis]
14 Hb_000317_050 0.0739478143 - - formiminotransferase-cyclodeaminase, putative [Ricinus communis]
15 Hb_002986_100 0.0754630372 - - PREDICTED: uncharacterized protein LOC105639686 [Jatropha curcas]
16 Hb_001456_060 0.0760636141 - - hypothetical protein JCGZ_17090 [Jatropha curcas]
17 Hb_004837_180 0.0761401896 transcription factor TF Family: NF-YA PREDICTED: nuclear transcription factor Y subunit A-1-like isoform X1 [Jatropha curcas]
18 Hb_001235_150 0.078106826 - - PREDICTED: chaperone protein dnaJ 13 isoform X1 [Jatropha curcas]
19 Hb_001720_040 0.0792886785 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000227_220 0.0796073938 - - PREDICTED: protein phosphatase 2C 70 [Jatropha curcas]

Gene co-expression network

sample Hb_000165_040 Hb_000165_040 Hb_005867_070 Hb_005867_070 Hb_000165_040--Hb_005867_070 Hb_000441_120 Hb_000441_120 Hb_000165_040--Hb_000441_120 Hb_000006_040 Hb_000006_040 Hb_000165_040--Hb_000006_040 Hb_000935_010 Hb_000935_010 Hb_000165_040--Hb_000935_010 Hb_000174_170 Hb_000174_170 Hb_000165_040--Hb_000174_170 Hb_001021_150 Hb_001021_150 Hb_000165_040--Hb_001021_150 Hb_003861_050 Hb_003861_050 Hb_005867_070--Hb_003861_050 Hb_004837_180 Hb_004837_180 Hb_005867_070--Hb_004837_180 Hb_005730_040 Hb_005730_040 Hb_005867_070--Hb_005730_040 Hb_007590_020 Hb_007590_020 Hb_005867_070--Hb_007590_020 Hb_000339_040 Hb_000339_040 Hb_005867_070--Hb_000339_040 Hb_006420_040 Hb_006420_040 Hb_000441_120--Hb_006420_040 Hb_003206_130 Hb_003206_130 Hb_000441_120--Hb_003206_130 Hb_000207_180 Hb_000207_180 Hb_000441_120--Hb_000207_180 Hb_000395_130 Hb_000395_130 Hb_000441_120--Hb_000395_130 Hb_009270_020 Hb_009270_020 Hb_000441_120--Hb_009270_020 Hb_004254_090 Hb_004254_090 Hb_000006_040--Hb_004254_090 Hb_183510_020 Hb_183510_020 Hb_000006_040--Hb_183510_020 Hb_001235_150 Hb_001235_150 Hb_000006_040--Hb_001235_150 Hb_033642_090 Hb_033642_090 Hb_000006_040--Hb_033642_090 Hb_000006_040--Hb_005867_070 Hb_004994_010 Hb_004994_010 Hb_000935_010--Hb_004994_010 Hb_001089_110 Hb_001089_110 Hb_000935_010--Hb_001089_110 Hb_000617_180 Hb_000617_180 Hb_000935_010--Hb_000617_180 Hb_002784_020 Hb_002784_020 Hb_000935_010--Hb_002784_020 Hb_002375_010 Hb_002375_010 Hb_000935_010--Hb_002375_010 Hb_000864_030 Hb_000864_030 Hb_000174_170--Hb_000864_030 Hb_006483_110 Hb_006483_110 Hb_000174_170--Hb_006483_110 Hb_000679_020 Hb_000679_020 Hb_000174_170--Hb_000679_020 Hb_000563_130 Hb_000563_130 Hb_000174_170--Hb_000563_130 Hb_008059_010 Hb_008059_010 Hb_000174_170--Hb_008059_010 Hb_002592_060 Hb_002592_060 Hb_001021_150--Hb_002592_060 Hb_008847_030 Hb_008847_030 Hb_001021_150--Hb_008847_030 Hb_001946_400 Hb_001946_400 Hb_001021_150--Hb_001946_400 Hb_000035_470 Hb_000035_470 Hb_001021_150--Hb_000035_470 Hb_006831_140 Hb_006831_140 Hb_001021_150--Hb_006831_140 Hb_000905_110 Hb_000905_110 Hb_001021_150--Hb_000905_110
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
11.0983 13.1336 14.0521 9.2248 16.1673 13.9801
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.3436 15.6555 9.13172 16.0889 15.2672

CAGE analysis