Hb_000165_160

Information

Type -
Description -
Location Contig165: 138187-146782
Sequence    

Annotation

kegg
ID rcu:RCOM_0839750
description sorting and assembly machinery (sam50) protein, putative
nr
ID XP_012086970.1
description PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
swissprot
ID Q6P806
description Sorting and assembly machinery component 50 homolog OS=Xenopus tropicalis GN=samm50 PE=2 SV=1
trembl
ID A0A067LKA6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_01224 PE=4 SV=1
Gene Ontology
ID GO:0019867
description outer membrane omp85 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15200: 138353-142052 , PASA_asmbl_15201: 138353-146114 , PASA_asmbl_15203: 146698-147064
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000165_160 0.0 - - PREDICTED: sorting and assembly machinery component 50 homolog [Jatropha curcas]
2 Hb_002799_070 0.077047845 - - PREDICTED: RNA-binding protein 39 [Jatropha curcas]
3 Hb_001507_040 0.0776080349 - - conserved hypothetical protein [Ricinus communis]
4 Hb_005183_120 0.0798365313 - - protein translocase, putative [Ricinus communis]
5 Hb_000445_040 0.0801659256 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
6 Hb_000783_020 0.0809041425 - - PREDICTED: glycerol-3-phosphate dehydrogenase SDP6, mitochondrial [Jatropha curcas]
7 Hb_000334_150 0.0871793218 - - conserved hypothetical protein [Ricinus communis]
8 Hb_020805_130 0.0877054256 - - protein phosphatase 2c, putative [Ricinus communis]
9 Hb_001489_080 0.0892620503 - - Protein kinase APK1B, chloroplast precursor, putative [Ricinus communis]
10 Hb_003291_010 0.0904409547 - - ATP-dependent protease La, putative [Ricinus communis]
11 Hb_007416_060 0.0923981089 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 18 [Jatropha curcas]
12 Hb_001318_270 0.096272437 - - PREDICTED: pentatricopeptide repeat-containing protein At4g32450, mitochondrial-like [Jatropha curcas]
13 Hb_000207_050 0.0993220686 - - PREDICTED: uncharacterized protein LOC105634369 isoform X1 [Jatropha curcas]
14 Hb_000676_150 0.1006907273 - - 50S ribosomal protein L7/L12, putative [Ricinus communis]
15 Hb_000260_030 0.1017550863 transcription factor TF Family: IWS1 transcription elongation factor s-II, putative [Ricinus communis]
16 Hb_001314_070 0.1020031118 - - conserved hypothetical protein [Ricinus communis]
17 Hb_000393_020 0.1021412874 - - lipid binding protein, putative [Ricinus communis]
18 Hb_003053_020 0.1026409153 - - PREDICTED: STE20/SPS1-related proline-alanine-rich protein kinase [Jatropha curcas]
19 Hb_003688_150 0.1030825616 - - glycine-rich RNA-binding protein, putative [Ricinus communis]
20 Hb_008616_070 0.1034094341 - - PREDICTED: trafficking protein particle complex subunit 8 isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000165_160 Hb_000165_160 Hb_002799_070 Hb_002799_070 Hb_000165_160--Hb_002799_070 Hb_001507_040 Hb_001507_040 Hb_000165_160--Hb_001507_040 Hb_005183_120 Hb_005183_120 Hb_000165_160--Hb_005183_120 Hb_000445_040 Hb_000445_040 Hb_000165_160--Hb_000445_040 Hb_000783_020 Hb_000783_020 Hb_000165_160--Hb_000783_020 Hb_000334_150 Hb_000334_150 Hb_000165_160--Hb_000334_150 Hb_000327_180 Hb_000327_180 Hb_002799_070--Hb_000327_180 Hb_001489_080 Hb_001489_080 Hb_002799_070--Hb_001489_080 Hb_001541_120 Hb_001541_120 Hb_002799_070--Hb_001541_120 Hb_006420_080 Hb_006420_080 Hb_002799_070--Hb_006420_080 Hb_001123_040 Hb_001123_040 Hb_002799_070--Hb_001123_040 Hb_020805_130 Hb_020805_130 Hb_001507_040--Hb_020805_130 Hb_008616_070 Hb_008616_070 Hb_001507_040--Hb_008616_070 Hb_002660_070 Hb_002660_070 Hb_001507_040--Hb_002660_070 Hb_001507_040--Hb_000445_040 Hb_006615_020 Hb_006615_020 Hb_001507_040--Hb_006615_020 Hb_000676_150 Hb_000676_150 Hb_005183_120--Hb_000676_150 Hb_000985_030 Hb_000985_030 Hb_005183_120--Hb_000985_030 Hb_005183_120--Hb_001489_080 Hb_001545_080 Hb_001545_080 Hb_005183_120--Hb_001545_080 Hb_005183_120--Hb_000783_020 Hb_012325_020 Hb_012325_020 Hb_000445_040--Hb_012325_020 Hb_000445_040--Hb_020805_130 Hb_001318_270 Hb_001318_270 Hb_000445_040--Hb_001318_270 Hb_002830_030 Hb_002830_030 Hb_000445_040--Hb_002830_030 Hb_000783_020--Hb_000985_030 Hb_003053_020 Hb_003053_020 Hb_000783_020--Hb_003053_020 Hb_000783_020--Hb_001489_080 Hb_003688_150 Hb_003688_150 Hb_000783_020--Hb_003688_150 Hb_003697_040 Hb_003697_040 Hb_000783_020--Hb_003697_040 Hb_007416_060 Hb_007416_060 Hb_000783_020--Hb_007416_060 Hb_000334_150--Hb_005183_120 Hb_001014_040 Hb_001014_040 Hb_000334_150--Hb_001014_040 Hb_050514_010 Hb_050514_010 Hb_000334_150--Hb_050514_010 Hb_003086_150 Hb_003086_150 Hb_000334_150--Hb_003086_150 Hb_002374_100 Hb_002374_100 Hb_000334_150--Hb_002374_100
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
5.71044 4.71643 7.04775 5.91099 5.94962 6.10497
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
10.2797 8.98165 18.6529 9.12031 10.092

CAGE analysis