Hb_000166_110

Information

Type transcription factor
Description TF Family: SNF2
Location Contig166: 190055-205338
Sequence    

Annotation

kegg
ID rcu:RCOM_0813670
description DNA repair and recombination protein RAD54B, putative (EC:2.7.11.1)
nr
ID XP_012066883.1
description PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
swissprot
ID Q0PCS3
description Protein CHROMATIN REMODELING 25 OS=Arabidopsis thaliana GN=CHR25 PE=1 SV=1
trembl
ID B9RYJ2
description DNA repair and recombination protein RAD54B, putative OS=Ricinus communis GN=RCOM_0813670 PE=4 SV=1
Gene Ontology
ID GO:0003677
description protein chromatin remodeling 25

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15281: 190077-190519 , PASA_asmbl_15282: 190984-191799 , PASA_asmbl_15283: 192004-192310 , PASA_asmbl_15285: 195543-198918 , PASA_asmbl_15286: 202007-203685
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000166_110 0.0 transcription factor TF Family: SNF2 PREDICTED: protein CHROMATIN REMODELING 25 [Jatropha curcas]
2 Hb_000889_020 0.0615505849 - - ribosome biogenesis protein brix, putative [Ricinus communis]
3 Hb_002054_040 0.0742181616 - - PREDICTED: putative clathrin assembly protein At5g35200 [Jatropha curcas]
4 Hb_005839_060 0.0764568152 - - PREDICTED: uncharacterized protein At2g40430 isoform X2 [Jatropha curcas]
5 Hb_004370_030 0.0766690398 - - PREDICTED: RNA-binding protein 34 [Jatropha curcas]
6 Hb_001124_160 0.0777687872 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
7 Hb_000076_120 0.0790556161 - - PREDICTED: FHA domain-containing protein DDL isoform X1 [Jatropha curcas]
8 Hb_004204_020 0.0806877826 - - PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC105640780 [Jatropha curcas]
9 Hb_003766_040 0.0842810772 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
10 Hb_004055_030 0.0843683049 - - casein kinase, putative [Ricinus communis]
11 Hb_004310_130 0.0852298872 - - PREDICTED: uncharacterized protein LOC105643225 [Jatropha curcas]
12 Hb_002030_030 0.0858072426 - - PREDICTED: GLABRA2 expression modulator [Jatropha curcas]
13 Hb_185830_020 0.0860784982 - - ABC transporter family protein [Hevea brasiliensis]
14 Hb_007218_080 0.0872311321 - - PREDICTED: uncharacterized protein LOC105631523 [Jatropha curcas]
15 Hb_039837_010 0.0885072853 - - PREDICTED: probable RNA helicase SDE3 [Populus euphratica]
16 Hb_000134_090 0.0888883431 - - PREDICTED: chaperone protein dnaJ 1, mitochondrial [Jatropha curcas]
17 Hb_000020_190 0.089005103 - - hypothetical protein RCOM_0452240 [Ricinus communis]
18 Hb_009133_010 0.0892887313 - - PREDICTED: L-aminoadipate-semialdehyde dehydrogenase-phosphopantetheinyl transferase-like [Jatropha curcas]
19 Hb_005883_050 0.0901115106 - - PREDICTED: transportin-3 [Jatropha curcas]
20 Hb_007441_120 0.0903942982 - - PREDICTED: dol-P-Man:Man(7)GlcNAc(2)-PP-Dol alpha-1,6-mannosyltransferase isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000166_110 Hb_000166_110 Hb_000889_020 Hb_000889_020 Hb_000166_110--Hb_000889_020 Hb_002054_040 Hb_002054_040 Hb_000166_110--Hb_002054_040 Hb_005839_060 Hb_005839_060 Hb_000166_110--Hb_005839_060 Hb_004370_030 Hb_004370_030 Hb_000166_110--Hb_004370_030 Hb_001124_160 Hb_001124_160 Hb_000166_110--Hb_001124_160 Hb_000076_120 Hb_000076_120 Hb_000166_110--Hb_000076_120 Hb_000373_240 Hb_000373_240 Hb_000889_020--Hb_000373_240 Hb_007218_080 Hb_007218_080 Hb_000889_020--Hb_007218_080 Hb_011794_060 Hb_011794_060 Hb_000889_020--Hb_011794_060 Hb_000179_020 Hb_000179_020 Hb_000889_020--Hb_000179_020 Hb_006692_030 Hb_006692_030 Hb_000889_020--Hb_006692_030 Hb_000031_220 Hb_000031_220 Hb_002054_040--Hb_000031_220 Hb_000260_220 Hb_000260_220 Hb_002054_040--Hb_000260_220 Hb_002374_050 Hb_002374_050 Hb_002054_040--Hb_002374_050 Hb_000134_090 Hb_000134_090 Hb_002054_040--Hb_000134_090 Hb_002982_040 Hb_002982_040 Hb_002054_040--Hb_002982_040 Hb_000703_220 Hb_000703_220 Hb_005839_060--Hb_000703_220 Hb_004204_020 Hb_004204_020 Hb_005839_060--Hb_004204_020 Hb_009133_010 Hb_009133_010 Hb_005839_060--Hb_009133_010 Hb_011689_020 Hb_011689_020 Hb_005839_060--Hb_011689_020 Hb_003673_060 Hb_003673_060 Hb_005839_060--Hb_003673_060 Hb_002044_060 Hb_002044_060 Hb_004370_030--Hb_002044_060 Hb_010931_080 Hb_010931_080 Hb_004370_030--Hb_010931_080 Hb_006252_040 Hb_006252_040 Hb_004370_030--Hb_006252_040 Hb_026099_010 Hb_026099_010 Hb_004370_030--Hb_026099_010 Hb_002942_160 Hb_002942_160 Hb_004370_030--Hb_002942_160 Hb_000768_110 Hb_000768_110 Hb_004370_030--Hb_000768_110 Hb_000020_190 Hb_000020_190 Hb_001124_160--Hb_000020_190 Hb_004055_030 Hb_004055_030 Hb_001124_160--Hb_004055_030 Hb_062135_030 Hb_062135_030 Hb_001124_160--Hb_062135_030 Hb_001124_160--Hb_002374_050 Hb_004310_130 Hb_004310_130 Hb_001124_160--Hb_004310_130 Hb_000058_100 Hb_000058_100 Hb_000076_120--Hb_000058_100 Hb_000926_280 Hb_000926_280 Hb_000076_120--Hb_000926_280 Hb_000076_120--Hb_004310_130 Hb_000053_130 Hb_000053_130 Hb_000076_120--Hb_000053_130 Hb_150360_030 Hb_150360_030 Hb_000076_120--Hb_150360_030 Hb_000076_120--Hb_007218_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.08854 2.48434 2.67591 2.84792 4.35309 9.697
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.63029 4.22662 4.71902 4.60884 2.91182

CAGE analysis