Hb_000167_010

Information

Type -
Description -
Location Contig167: 1306-7598
Sequence    

Annotation

kegg
ID rcu:RCOM_0721820
description hypothetical protein
nr
ID XP_002529591.1
description conserved hypothetical protein [Ricinus communis]
swissprot
ID -
description -
trembl
ID B9SUC2
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0721820 PE=4 SV=1
Gene Ontology
ID GO:0008270
description e3 ubiquitin-protein ligase rfwd3-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15391: 1304-4318 , PASA_asmbl_15392: 4323-7503
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_010 0.0 - - conserved hypothetical protein [Ricinus communis]
2 Hb_003058_120 0.060855721 - - PREDICTED: 26S proteasome non-ATPase regulatory subunit 4 homolog [Jatropha curcas]
3 Hb_002439_010 0.0627371749 - - PREDICTED: DNA damage-inducible protein 1 [Jatropha curcas]
4 Hb_000069_720 0.0676460593 - - PREDICTED: exosome complex component RRP41-like [Jatropha curcas]
5 Hb_003883_060 0.068488382 transcription factor TF Family: BSD PREDICTED: probable RNA polymerase II transcription factor B subunit 1-1 isoform X1 [Jatropha curcas]
6 Hb_001301_150 0.0702234171 - - PREDICTED: UPF0136 membrane protein At2g26240 [Vitis vinifera]
7 Hb_023001_040 0.0703917756 - - Metallopeptidase M24 family protein isoform 1 [Theobroma cacao]
8 Hb_001301_110 0.0711248847 - - PREDICTED: vacuolar protein sorting-associated protein 22 homolog 1 [Jatropha curcas]
9 Hb_001828_180 0.0711624151 - - 26S proteasome regulatory subunit S3, putative [Ricinus communis]
10 Hb_004157_050 0.0770699726 - - PREDICTED: uncharacterized protein LOC105628218 isoform X1 [Jatropha curcas]
11 Hb_000665_140 0.078017992 - - PREDICTED: protein MEMO1 [Jatropha curcas]
12 Hb_000663_060 0.0787258267 - - hypothetical protein JCGZ_16277 [Jatropha curcas]
13 Hb_000363_190 0.079434865 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM22-2-like isoform X1 [Jatropha curcas]
14 Hb_000120_370 0.0798813937 - - type 2 diacylglycerol acyltransferase [Ricinus communis]
15 Hb_000367_090 0.0811483512 - - PREDICTED: plant intracellular Ras-group-related LRR protein 7 [Jatropha curcas]
16 Hb_000510_340 0.0815447304 transcription factor TF Family: bZIP PREDICTED: light-inducible protein CPRF2 [Jatropha curcas]
17 Hb_002357_060 0.0815975532 - - hypothetical protein CICLE_v10006112mg [Citrus clementina]
18 Hb_007472_070 0.0819970181 - - cir, putative [Ricinus communis]
19 Hb_000853_150 0.0822045455 - - Fumarase 1 isoform 2 [Theobroma cacao]
20 Hb_005588_060 0.0835843456 - - PREDICTED: succinate dehydrogenase subunit 5, mitochondrial [Jatropha curcas]

Gene co-expression network

sample Hb_000167_010 Hb_000167_010 Hb_003058_120 Hb_003058_120 Hb_000167_010--Hb_003058_120 Hb_002439_010 Hb_002439_010 Hb_000167_010--Hb_002439_010 Hb_000069_720 Hb_000069_720 Hb_000167_010--Hb_000069_720 Hb_003883_060 Hb_003883_060 Hb_000167_010--Hb_003883_060 Hb_001301_150 Hb_001301_150 Hb_000167_010--Hb_001301_150 Hb_023001_040 Hb_023001_040 Hb_000167_010--Hb_023001_040 Hb_000853_150 Hb_000853_150 Hb_003058_120--Hb_000853_150 Hb_005588_060 Hb_005588_060 Hb_003058_120--Hb_005588_060 Hb_003058_120--Hb_023001_040 Hb_000392_420 Hb_000392_420 Hb_003058_120--Hb_000392_420 Hb_004157_050 Hb_004157_050 Hb_003058_120--Hb_004157_050 Hb_000510_340 Hb_000510_340 Hb_002439_010--Hb_000510_340 Hb_001828_180 Hb_001828_180 Hb_002439_010--Hb_001828_180 Hb_004319_080 Hb_004319_080 Hb_002439_010--Hb_004319_080 Hb_002439_010--Hb_003883_060 Hb_002439_010--Hb_001301_150 Hb_001301_110 Hb_001301_110 Hb_000069_720--Hb_001301_110 Hb_000069_720--Hb_004157_050 Hb_003878_090 Hb_003878_090 Hb_000069_720--Hb_003878_090 Hb_003678_020 Hb_003678_020 Hb_000069_720--Hb_003678_020 Hb_000840_200 Hb_000840_200 Hb_000069_720--Hb_000840_200 Hb_003883_060--Hb_001301_150 Hb_013726_090 Hb_013726_090 Hb_003883_060--Hb_013726_090 Hb_004705_170 Hb_004705_170 Hb_003883_060--Hb_004705_170 Hb_000976_140 Hb_000976_140 Hb_003883_060--Hb_000976_140 Hb_003581_200 Hb_003581_200 Hb_003883_060--Hb_003581_200 Hb_000138_100 Hb_000138_100 Hb_001301_150--Hb_000138_100 Hb_001301_150--Hb_004319_080 Hb_001876_050 Hb_001876_050 Hb_001301_150--Hb_001876_050 Hb_000329_800 Hb_000329_800 Hb_001301_150--Hb_000329_800 Hb_183510_020 Hb_183510_020 Hb_001301_150--Hb_183510_020 Hb_149985_010 Hb_149985_010 Hb_023001_040--Hb_149985_010 Hb_023001_040--Hb_005588_060 Hb_000663_060 Hb_000663_060 Hb_023001_040--Hb_000663_060 Hb_023001_040--Hb_001828_180
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.90673 3.23593 5.10199 5.65618 2.40889 3.25793
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
5.49078 4.79268 3.03642 6.94876 4.73058

CAGE analysis