Hb_000167_030

Information

Type -
Description -
Location Contig167: 17977-21242
Sequence    

Annotation

kegg
ID rcu:RCOM_0721940
description hypothetical protein
nr
ID XP_012080975.1
description PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID B9SUC3
description Putative uncharacterized protein OS=Ricinus communis GN=RCOM_0721940 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15393: 17982-21220 , PASA_asmbl_15394: 19620-19842
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_030 0.0 - - PREDICTED: uncharacterized protein LOC105641111 isoform X1 [Jatropha curcas]
2 Hb_007218_150 0.119226547 - - RecName: Full=Profilin-3; AltName: Full=Pollen allergen Hev b 8.0201; AltName: Allergen=Hev b 8.0201 [Hevea brasiliensis]
3 Hb_009778_040 0.1371577925 - - PREDICTED: uncharacterized protein LOC105110611 [Populus euphratica]
4 Hb_116420_020 0.1375438668 - - Phytosulfokines 3 precursor family protein [Populus trichocarpa]
5 Hb_005663_120 0.1377443421 - - PREDICTED: uncharacterized protein LOC105635265 [Jatropha curcas]
6 Hb_001232_140 0.1515133767 - - PREDICTED: uncharacterized protein LOC105634966 [Jatropha curcas]
7 Hb_032969_030 0.1534373941 - - calmodulin binding protein, putative [Ricinus communis]
8 Hb_000300_390 0.1534526735 - - BTB/POZ domain-containing protein KCTD9, putative [Ricinus communis]
9 Hb_025645_030 0.1580549021 - - -
10 Hb_005656_190 0.1610446094 - - proteasome subunit beta type 6,9, putative [Ricinus communis]
11 Hb_000789_110 0.1620722309 - - RecName: Full=Profilin-1; AltName: Full=Pollen allergen Hev b 8.0101; AltName: Allergen=Hev b 8.0101 [Hevea brasiliensis]
12 Hb_000318_490 0.1639275966 - - PREDICTED: mitochondrial import receptor subunit TOM6 homolog [Jatropha curcas]
13 Hb_002316_120 0.1657722523 - - hypothetical protein POPTR_0015s08460g [Populus trichocarpa]
14 Hb_004755_030 0.1659439657 - - EG964 [Manihot glaziovii]
15 Hb_003181_050 0.1688508307 - - PREDICTED: DNA replication complex GINS protein PSF2 [Jatropha curcas]
16 Hb_001096_030 0.1688775361 - - uridylate kinase plant, putative [Ricinus communis]
17 Hb_002704_050 0.1694826508 - - cysteine-type peptidase, putative [Ricinus communis]
18 Hb_001604_030 0.1703560475 - - ubiquitin-conjugating enzyme E2 35-like [Cucumis sativus]
19 Hb_000613_160 0.1709922077 - - coated vesicle membrane protein, putative [Ricinus communis]
20 Hb_001377_380 0.1717050136 - - PREDICTED: uncharacterized protein LOC105642831 [Jatropha curcas]

Gene co-expression network

sample Hb_000167_030 Hb_000167_030 Hb_007218_150 Hb_007218_150 Hb_000167_030--Hb_007218_150 Hb_009778_040 Hb_009778_040 Hb_000167_030--Hb_009778_040 Hb_116420_020 Hb_116420_020 Hb_000167_030--Hb_116420_020 Hb_005663_120 Hb_005663_120 Hb_000167_030--Hb_005663_120 Hb_001232_140 Hb_001232_140 Hb_000167_030--Hb_001232_140 Hb_032969_030 Hb_032969_030 Hb_000167_030--Hb_032969_030 Hb_007317_160 Hb_007317_160 Hb_007218_150--Hb_007317_160 Hb_007218_150--Hb_032969_030 Hb_000300_390 Hb_000300_390 Hb_007218_150--Hb_000300_390 Hb_007218_150--Hb_005663_120 Hb_000789_110 Hb_000789_110 Hb_007218_150--Hb_000789_110 Hb_002081_030 Hb_002081_030 Hb_009778_040--Hb_002081_030 Hb_002838_030 Hb_002838_030 Hb_009778_040--Hb_002838_030 Hb_001105_090 Hb_001105_090 Hb_009778_040--Hb_001105_090 Hb_003020_330 Hb_003020_330 Hb_009778_040--Hb_003020_330 Hb_006588_080 Hb_006588_080 Hb_009778_040--Hb_006588_080 Hb_120823_010 Hb_120823_010 Hb_009778_040--Hb_120823_010 Hb_116420_020--Hb_009778_040 Hb_025645_030 Hb_025645_030 Hb_116420_020--Hb_025645_030 Hb_001096_030 Hb_001096_030 Hb_116420_020--Hb_001096_030 Hb_007254_080 Hb_007254_080 Hb_116420_020--Hb_007254_080 Hb_116420_020--Hb_005663_120 Hb_005663_120--Hb_000300_390 Hb_012539_020 Hb_012539_020 Hb_005663_120--Hb_012539_020 Hb_002316_120 Hb_002316_120 Hb_005663_120--Hb_002316_120 Hb_005663_120--Hb_032969_030 Hb_005527_040 Hb_005527_040 Hb_005663_120--Hb_005527_040 Hb_000389_080 Hb_000389_080 Hb_005663_120--Hb_000389_080 Hb_001135_210 Hb_001135_210 Hb_001232_140--Hb_001135_210 Hb_001232_140--Hb_005663_120 Hb_001232_140--Hb_032969_030 Hb_000896_120 Hb_000896_120 Hb_001232_140--Hb_000896_120 Hb_000099_130 Hb_000099_130 Hb_001232_140--Hb_000099_130 Hb_001157_010 Hb_001157_010 Hb_001232_140--Hb_001157_010 Hb_032969_030--Hb_000300_390 Hb_003581_220 Hb_003581_220 Hb_032969_030--Hb_003581_220 Hb_000976_250 Hb_000976_250 Hb_032969_030--Hb_000976_250 Hb_001785_040 Hb_001785_040 Hb_032969_030--Hb_001785_040 Hb_032969_030--Hb_001157_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.14759 2.18204 13.6254 34.9263 3.15139 8.57028
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
76.2382 118.123 68.5759 7.12283 4.08566

CAGE analysis