Hb_000167_050

Information

Type -
Description -
Location Contig167: 30168-34625
Sequence    

Annotation

kegg
ID rcu:RCOM_0721960
description hypothetical protein
nr
ID XP_012080968.1
description PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067K2M9
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_16160 PE=4 SV=1
Gene Ontology
ID GO:0009555
description vacuolar acid trehalase

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15395: 25105-29630 , PASA_asmbl_15396: 30153-34339
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000167_050 0.0 - - PREDICTED: uncharacterized protein LOC105641106 [Jatropha curcas]
2 Hb_000638_160 0.0878192649 - - PREDICTED: uncharacterized protein LOC105637288 [Jatropha curcas]
3 Hb_000394_180 0.1047880315 - - PREDICTED: uncharacterized protein LOC105636995 [Jatropha curcas]
4 Hb_000723_290 0.1059437895 - - calcium lipid binding protein, putative [Ricinus communis]
5 Hb_009780_050 0.1079435789 - - PREDICTED: glutathione S-transferase DHAR3, chloroplastic [Jatropha curcas]
6 Hb_005846_030 0.111748696 - - PREDICTED: 50S ribosomal protein L29, chloroplastic [Jatropha curcas]
7 Hb_000176_010 0.1138845205 - - PREDICTED: 50S ribosomal protein L35, chloroplastic [Jatropha curcas]
8 Hb_001277_100 0.1169527742 - - PREDICTED: 2-methyl-6-phytyl-1,4-hydroquinone methyltransferase, chloroplastic-like isoform X1 [Gossypium raimondii]
9 Hb_000984_240 0.1190721355 - - hypothetical protein JCGZ_15962 [Jatropha curcas]
10 Hb_001399_010 0.1216538607 - - ATP binding protein, putative [Ricinus communis]
11 Hb_001369_790 0.1255646942 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic [Jatropha curcas]
12 Hb_007192_030 0.1270322408 - - PREDICTED: manganese-dependent ADP-ribose/CDP-alcohol diphosphatase [Jatropha curcas]
13 Hb_001301_340 0.1294120789 - - endoribonuclease L-PSP family protein [Populus trichocarpa]
14 Hb_004257_010 0.1350605488 - - CMP-sialic acid transporter, putative [Ricinus communis]
15 Hb_000622_290 0.1361088871 - - PREDICTED: F-box/kelch-repeat protein At3g61590 [Jatropha curcas]
16 Hb_000107_510 0.137896977 - - phosphate transporter [Manihot esculenta]
17 Hb_014834_130 0.1390980925 - - PREDICTED: formyltetrahydrofolate deformylase 1, mitochondrial-like [Jatropha curcas]
18 Hb_002053_010 0.1399504849 - - PREDICTED: clp protease-related protein At4g12060, chloroplastic-like [Jatropha curcas]
19 Hb_000365_370 0.1399576794 - - conserved hypothetical protein [Ricinus communis]
20 Hb_006846_150 0.1402221017 - - conserved hypothetical protein [Ricinus communis]

Gene co-expression network

sample Hb_000167_050 Hb_000167_050 Hb_000638_160 Hb_000638_160 Hb_000167_050--Hb_000638_160 Hb_000394_180 Hb_000394_180 Hb_000167_050--Hb_000394_180 Hb_000723_290 Hb_000723_290 Hb_000167_050--Hb_000723_290 Hb_009780_050 Hb_009780_050 Hb_000167_050--Hb_009780_050 Hb_005846_030 Hb_005846_030 Hb_000167_050--Hb_005846_030 Hb_000176_010 Hb_000176_010 Hb_000167_050--Hb_000176_010 Hb_000638_160--Hb_005846_030 Hb_014834_130 Hb_014834_130 Hb_000638_160--Hb_014834_130 Hb_011689_120 Hb_011689_120 Hb_000638_160--Hb_011689_120 Hb_000622_240 Hb_000622_240 Hb_000638_160--Hb_000622_240 Hb_000462_090 Hb_000462_090 Hb_000638_160--Hb_000462_090 Hb_004951_060 Hb_004951_060 Hb_000394_180--Hb_004951_060 Hb_007192_030 Hb_007192_030 Hb_000394_180--Hb_007192_030 Hb_001369_790 Hb_001369_790 Hb_000394_180--Hb_001369_790 Hb_001301_340 Hb_001301_340 Hb_000394_180--Hb_001301_340 Hb_006846_150 Hb_006846_150 Hb_000394_180--Hb_006846_150 Hb_004257_010 Hb_004257_010 Hb_000394_180--Hb_004257_010 Hb_010577_040 Hb_010577_040 Hb_000723_290--Hb_010577_040 Hb_004109_160 Hb_004109_160 Hb_000723_290--Hb_004109_160 Hb_000365_370 Hb_000365_370 Hb_000723_290--Hb_000365_370 Hb_001124_180 Hb_001124_180 Hb_000723_290--Hb_001124_180 Hb_000723_290--Hb_000176_010 Hb_009780_050--Hb_000176_010 Hb_001711_120 Hb_001711_120 Hb_009780_050--Hb_001711_120 Hb_065525_120 Hb_065525_120 Hb_009780_050--Hb_065525_120 Hb_002053_010 Hb_002053_010 Hb_009780_050--Hb_002053_010 Hb_009780_050--Hb_001124_180 Hb_007632_170 Hb_007632_170 Hb_005846_030--Hb_007632_170 Hb_005725_220 Hb_005725_220 Hb_005846_030--Hb_005725_220 Hb_001712_020 Hb_001712_020 Hb_005846_030--Hb_001712_020 Hb_000164_140 Hb_000164_140 Hb_005846_030--Hb_000164_140 Hb_000176_010--Hb_001124_180 Hb_000627_300 Hb_000627_300 Hb_000176_010--Hb_000627_300 Hb_000042_290 Hb_000042_290 Hb_000176_010--Hb_000042_290 Hb_002150_130 Hb_002150_130 Hb_000176_010--Hb_002150_130
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
1.16776 0.72972 5.31114 5.09848 0.888346 2.22969
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.42998 5.82553 3.99933 1.03109 8.32774

CAGE analysis