Hb_000169_010

Information

Type -
Description -
Location Contig169: 8909-14506
Sequence    

Annotation

kegg
ID pop:POPTR_0014s12890g
description POPTRDRAFT_245964; hypothetical protein
nr
ID XP_012082671.1
description PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
swissprot
ID Q96PM5
description RING finger and CHY zinc finger domain-containing protein 1 OS=Homo sapiens GN=RCHY1 PE=1 SV=1
trembl
ID A0A067JVU6
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13862 PE=4 SV=1
Gene Ontology
ID GO:0008270
description ring finger and chy zinc finger domain-containing protein 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15679: 11662-12377 , PASA_asmbl_15680: 10941-11265 , PASA_asmbl_15681: 8898-14484
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_010 0.0 - - PREDICTED: RING finger and CHY zinc finger domain-containing protein 1 [Jatropha curcas]
2 Hb_003392_040 0.0544297823 - - PREDICTED: D-aminoacyl-tRNA deacylase [Jatropha curcas]
3 Hb_000720_120 0.0553780569 - - PREDICTED: general transcription factor IIE subunit 2-like [Jatropha curcas]
4 Hb_005539_030 0.0586880452 - - PREDICTED: ubiquitin-like-specific protease 1D isoform X2 [Jatropha curcas]
5 Hb_007254_040 0.0620262959 - - PREDICTED: protein MITOFERRINLIKE 1, chloroplastic [Jatropha curcas]
6 Hb_000032_570 0.0633713926 transcription factor TF Family: Coactivator p15 PREDICTED: RNA polymerase II transcriptional coactivator KELP [Jatropha curcas]
7 Hb_001135_050 0.0641686364 - - PREDICTED: nitrilase-like protein 2 isoform X1 [Jatropha curcas]
8 Hb_001329_220 0.0655352028 - - conserved hypothetical protein [Ricinus communis]
9 Hb_001009_040 0.067698007 - - PREDICTED: mitochondrial pyruvate carrier 1 [Jatropha curcas]
10 Hb_000638_080 0.0738339265 - - PREDICTED: uncharacterized protein LOC105632765 [Jatropha curcas]
11 Hb_123475_010 0.0750183432 - - PREDICTED: hepatocyte growth factor-regulated tyrosine kinase substrate [Jatropha curcas]
12 Hb_004970_110 0.0778293522 - - PREDICTED: protein ROOT INITIATION DEFECTIVE 3 [Jatropha curcas]
13 Hb_001221_410 0.0781706134 - - PREDICTED: gamma carbonic anhydrase-like 2, mitochondrial [Jatropha curcas]
14 Hb_002232_170 0.0796621551 - - PREDICTED: uncharacterized protein LOC105635984 [Jatropha curcas]
15 Hb_003058_130 0.0799866314 - - PREDICTED: protein N-lysine methyltransferase METTL21A isoform X1 [Jatropha curcas]
16 Hb_004221_010 0.080047413 transcription factor TF Family: NAC PREDICTED: NAC domain-containing protein 19-like [Jatropha curcas]
17 Hb_004048_070 0.0810294437 - - PREDICTED: anaphase-promoting complex subunit 6 [Jatropha curcas]
18 Hb_158092_070 0.0821839384 - - PREDICTED: cytochrome b-c1 complex subunit Rieske-4, mitochondrial-like [Jatropha curcas]
19 Hb_005389_150 0.0835688986 - - conserved hypothetical protein [Ricinus communis]
20 Hb_000808_040 0.0863182101 - - PREDICTED: protein DEHYDRATION-INDUCED 19 homolog 3 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_010 Hb_000169_010 Hb_003392_040 Hb_003392_040 Hb_000169_010--Hb_003392_040 Hb_000720_120 Hb_000720_120 Hb_000169_010--Hb_000720_120 Hb_005539_030 Hb_005539_030 Hb_000169_010--Hb_005539_030 Hb_007254_040 Hb_007254_040 Hb_000169_010--Hb_007254_040 Hb_000032_570 Hb_000032_570 Hb_000169_010--Hb_000032_570 Hb_001135_050 Hb_001135_050 Hb_000169_010--Hb_001135_050 Hb_003058_130 Hb_003058_130 Hb_003392_040--Hb_003058_130 Hb_011689_080 Hb_011689_080 Hb_003392_040--Hb_011689_080 Hb_003392_040--Hb_000032_570 Hb_001377_290 Hb_001377_290 Hb_003392_040--Hb_001377_290 Hb_003392_040--Hb_000720_120 Hb_001138_050 Hb_001138_050 Hb_000720_120--Hb_001138_050 Hb_000613_140 Hb_000613_140 Hb_000720_120--Hb_000613_140 Hb_000638_080 Hb_000638_080 Hb_000720_120--Hb_000638_080 Hb_000720_120--Hb_000032_570 Hb_004970_110 Hb_004970_110 Hb_005539_030--Hb_004970_110 Hb_000483_360 Hb_000483_360 Hb_005539_030--Hb_000483_360 Hb_004048_070 Hb_004048_070 Hb_005539_030--Hb_004048_070 Hb_005539_030--Hb_000638_080 Hb_005539_030--Hb_007254_040 Hb_008554_020 Hb_008554_020 Hb_007254_040--Hb_008554_020 Hb_007317_180 Hb_007317_180 Hb_007254_040--Hb_007317_180 Hb_011310_190 Hb_011310_190 Hb_007254_040--Hb_011310_190 Hb_007254_040--Hb_004970_110 Hb_007254_040--Hb_001135_050 Hb_001030_120 Hb_001030_120 Hb_000032_570--Hb_001030_120 Hb_028872_140 Hb_028872_140 Hb_000032_570--Hb_028872_140 Hb_003728_020 Hb_003728_020 Hb_000032_570--Hb_003728_020 Hb_006692_030 Hb_006692_030 Hb_000032_570--Hb_006692_030 Hb_001246_090 Hb_001246_090 Hb_001135_050--Hb_001246_090 Hb_001135_050--Hb_003392_040 Hb_001135_050--Hb_000638_080 Hb_001135_050--Hb_004048_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
32.3872 11.2936 9.40849 10.4935 31.1071 38.0958
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
44.5375 30.1987 19.025 19.4821 6.35203

CAGE analysis