Hb_000169_040

Information

Type -
Description -
Location Contig169: 29364-31606
Sequence    

Annotation

kegg
ID rcu:RCOM_0556030
description hypothetical protein
nr
ID XP_012082667.1
description PREDICTED: stress response protein nst1-like [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JW11
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13858 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15689: 29870-30058 , PASA_asmbl_15690: 31071-31606
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_040 0.0 - - PREDICTED: stress response protein nst1-like [Jatropha curcas]
2 Hb_000840_180 0.0616766136 - - protein BOLA2 [Jatropha curcas]
3 Hb_002056_050 0.0730168284 - - PREDICTED: uncharacterized protein LOC105130744 [Populus euphratica]
4 Hb_002798_020 0.0751069998 - - PREDICTED: uncharacterized protein LOC105647735 [Jatropha curcas]
5 Hb_003540_240 0.0752639263 - - PREDICTED: ribosomal RNA-processing protein 17 [Jatropha curcas]
6 Hb_007220_010 0.0799546994 - - PREDICTED: methylcrotonoyl-CoA carboxylase beta chain, mitochondrial [Jatropha curcas]
7 Hb_004127_020 0.0803120178 - - PREDICTED: probable RNA 3'-terminal phosphate cyclase-like protein isoform X1 [Populus euphratica]
8 Hb_026053_020 0.0846053171 - - PREDICTED: uncharacterized protein LOC105643718 [Jatropha curcas]
9 Hb_000265_050 0.0874462034 - - hypothetical protein CISIN_1g033530mg [Citrus sinensis]
10 Hb_007576_170 0.0881894449 - - conserved hypothetical protein [Ricinus communis]
11 Hb_006198_070 0.0894243617 - - pantoate-beta-alanine ligase, putative [Ricinus communis]
12 Hb_002235_350 0.0895119381 - - PREDICTED: uncharacterized protein LOC105635929 [Jatropha curcas]
13 Hb_000920_110 0.0896950731 - - PREDICTED: U3 small nucleolar ribonucleoprotein protein IMP4 [Jatropha curcas]
14 Hb_001279_080 0.0897956182 transcription factor TF Family: C2H2 PREDICTED: uncharacterized protein LOC105140180 isoform X1 [Populus euphratica]
15 Hb_017225_020 0.0903409382 - - PREDICTED: protein BRICK 1 [Gossypium raimondii]
16 Hb_000441_110 0.0903554717 - - PREDICTED: uncharacterized protein LOC105646523 [Jatropha curcas]
17 Hb_001484_070 0.0904909776 - - conserved hypothetical protein [Ricinus communis]
18 Hb_001780_040 0.0905676889 - - PREDICTED: mitochondrial import inner membrane translocase subunit TIM10 [Jatropha curcas]
19 Hb_004459_040 0.0921997983 - - PREDICTED: uncharacterized protein LOC105649649 [Jatropha curcas]
20 Hb_003226_100 0.0940318457 - - PREDICTED: 60S ribosomal protein L18-2 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_040 Hb_000169_040 Hb_000840_180 Hb_000840_180 Hb_000169_040--Hb_000840_180 Hb_002056_050 Hb_002056_050 Hb_000169_040--Hb_002056_050 Hb_002798_020 Hb_002798_020 Hb_000169_040--Hb_002798_020 Hb_003540_240 Hb_003540_240 Hb_000169_040--Hb_003540_240 Hb_007220_010 Hb_007220_010 Hb_000169_040--Hb_007220_010 Hb_004127_020 Hb_004127_020 Hb_000169_040--Hb_004127_020 Hb_000840_180--Hb_004127_020 Hb_000840_180--Hb_002798_020 Hb_004459_040 Hb_004459_040 Hb_000840_180--Hb_004459_040 Hb_026053_020 Hb_026053_020 Hb_000840_180--Hb_026053_020 Hb_000996_140 Hb_000996_140 Hb_000840_180--Hb_000996_140 Hb_000920_110 Hb_000920_110 Hb_002056_050--Hb_000920_110 Hb_010068_020 Hb_010068_020 Hb_002056_050--Hb_010068_020 Hb_003226_100 Hb_003226_100 Hb_002056_050--Hb_003226_100 Hb_002056_050--Hb_003540_240 Hb_000172_320 Hb_000172_320 Hb_002056_050--Hb_000172_320 Hb_001484_070 Hb_001484_070 Hb_002056_050--Hb_001484_070 Hb_007065_010 Hb_007065_010 Hb_002798_020--Hb_007065_010 Hb_007576_170 Hb_007576_170 Hb_002798_020--Hb_007576_170 Hb_000265_050 Hb_000265_050 Hb_002798_020--Hb_000265_050 Hb_002798_020--Hb_003226_100 Hb_002798_020--Hb_004127_020 Hb_002798_020--Hb_002056_050 Hb_000441_110 Hb_000441_110 Hb_003540_240--Hb_000441_110 Hb_002235_350 Hb_002235_350 Hb_003540_240--Hb_002235_350 Hb_003540_240--Hb_004127_020 Hb_003540_240--Hb_002798_020 Hb_007304_090 Hb_007304_090 Hb_007220_010--Hb_007304_090 Hb_028486_030 Hb_028486_030 Hb_007220_010--Hb_028486_030 Hb_007220_010--Hb_000840_180 Hb_001318_260 Hb_001318_260 Hb_007220_010--Hb_001318_260 Hb_000327_060 Hb_000327_060 Hb_007220_010--Hb_000327_060 Hb_000479_090 Hb_000479_090 Hb_004127_020--Hb_000479_090 Hb_004143_150 Hb_004143_150 Hb_004127_020--Hb_004143_150 Hb_004127_020--Hb_000265_050 Hb_004899_370 Hb_004899_370 Hb_004127_020--Hb_004899_370
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
10.9124 4.67546 9.28238 9.01897 6.98184 7.94659
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
15.8694 33.6036 13.6974 9.99042 13.12

CAGE analysis