Hb_000169_070

Information

Type -
Description -
Location Contig169: 39644-43598
Sequence    

Annotation

kegg
ID rcu:RCOM_0556140
description TRANSPORT INHIBITOR RESPONSE 1 protein, putative
nr
ID XP_012082666.1
description PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
swissprot
ID Q570C0
description Protein TRANSPORT INHIBITOR RESPONSE 1 OS=Arabidopsis thaliana GN=TIR1 PE=1 SV=2
trembl
ID A0A067K8E0
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_13855 PE=4 SV=1
Gene Ontology
ID GO:0019005
description protein transport inhibitor response 1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15693: 39652-43558
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_070 0.0 - - PREDICTED: protein TRANSPORT INHIBITOR RESPONSE 1 [Jatropha curcas]
2 Hb_003397_030 0.081803629 rubber biosynthesis Gene Name: Pyruvate dehydrogenase PREDICTED: pyruvate dehydrogenase E1 component subunit beta-3, chloroplastic [Jatropha curcas]
3 Hb_001386_090 0.0998574247 - - PREDICTED: uncharacterized protein LOC105632529 [Jatropha curcas]
4 Hb_006252_030 0.0999476439 - - PREDICTED: uncharacterized protein LOC105638333 [Jatropha curcas]
5 Hb_000322_040 0.1166564203 - - PREDICTED: lycopene epsilon cyclase, chloroplastic [Jatropha curcas]
6 Hb_003470_100 0.1207039405 - - protein binding protein, putative [Ricinus communis]
7 Hb_004007_170 0.1230900762 - - Glucan endo-1,3-beta-glucosidase precursor, putative [Ricinus communis]
8 Hb_000146_030 0.1257870087 - - PREDICTED: 50S ribosomal protein L10, chloroplastic [Jatropha curcas]
9 Hb_001711_060 0.1263767079 - - PREDICTED: ferredoxin isoform X1 [Jatropha curcas]
10 Hb_004117_150 0.1275354109 - - PREDICTED: uncharacterized protein LOC105649105 [Jatropha curcas]
11 Hb_001999_260 0.1283899161 - - PREDICTED: 50S ribosomal protein L4, chloroplastic [Jatropha curcas]
12 Hb_001047_180 0.1290883269 - - conserved hypothetical protein [Ricinus communis]
13 Hb_001343_120 0.1305613896 - - conserved hypothetical protein [Ricinus communis]
14 Hb_004208_090 0.1312782399 - - RNA polymerase sigma factor rpoD, putative [Ricinus communis]
15 Hb_002435_090 0.133604314 - - PREDICTED: membrane-associated 30 kDa protein, chloroplastic [Jatropha curcas]
16 Hb_005000_060 0.1355043156 - - PREDICTED: uncharacterized protein LOC105637867 [Jatropha curcas]
17 Hb_001975_050 0.1370068712 - - Tyrosine-specific transport protein, putative [Ricinus communis]
18 Hb_000028_150 0.1407670554 transcription factor TF Family: Tify PREDICTED: protein TIFY 6B isoform X1 [Jatropha curcas]
19 Hb_001366_350 0.1408500075 - - PREDICTED: peptidyl-prolyl cis-trans isomerase isoform X2 [Jatropha curcas]
20 Hb_000056_310 0.1417812511 - - PREDICTED: uncharacterized protein LOC105630433 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_070 Hb_000169_070 Hb_003397_030 Hb_003397_030 Hb_000169_070--Hb_003397_030 Hb_001386_090 Hb_001386_090 Hb_000169_070--Hb_001386_090 Hb_006252_030 Hb_006252_030 Hb_000169_070--Hb_006252_030 Hb_000322_040 Hb_000322_040 Hb_000169_070--Hb_000322_040 Hb_003470_100 Hb_003470_100 Hb_000169_070--Hb_003470_100 Hb_004007_170 Hb_004007_170 Hb_000169_070--Hb_004007_170 Hb_003397_030--Hb_001386_090 Hb_001711_060 Hb_001711_060 Hb_003397_030--Hb_001711_060 Hb_004517_030 Hb_004517_030 Hb_003397_030--Hb_004517_030 Hb_000792_050 Hb_000792_050 Hb_003397_030--Hb_000792_050 Hb_000438_130 Hb_000438_130 Hb_003397_030--Hb_000438_130 Hb_001386_090--Hb_000438_130 Hb_001386_090--Hb_001711_060 Hb_001386_090--Hb_004517_030 Hb_000392_450 Hb_000392_450 Hb_001386_090--Hb_000392_450 Hb_006252_030--Hb_000322_040 Hb_000056_310 Hb_000056_310 Hb_006252_030--Hb_000056_310 Hb_005618_080 Hb_005618_080 Hb_006252_030--Hb_005618_080 Hb_000749_200 Hb_000749_200 Hb_006252_030--Hb_000749_200 Hb_002498_170 Hb_002498_170 Hb_006252_030--Hb_002498_170 Hb_000934_260 Hb_000934_260 Hb_000322_040--Hb_000934_260 Hb_000322_040--Hb_000056_310 Hb_004208_090 Hb_004208_090 Hb_000322_040--Hb_004208_090 Hb_000146_030 Hb_000146_030 Hb_000322_040--Hb_000146_030 Hb_000802_050 Hb_000802_050 Hb_000322_040--Hb_000802_050 Hb_003470_100--Hb_004007_170 Hb_050514_020 Hb_050514_020 Hb_003470_100--Hb_050514_020 Hb_004855_070 Hb_004855_070 Hb_003470_100--Hb_004855_070 Hb_001999_260 Hb_001999_260 Hb_003470_100--Hb_001999_260 Hb_003470_100--Hb_004208_090 Hb_001047_180 Hb_001047_180 Hb_003470_100--Hb_001047_180 Hb_004117_150 Hb_004117_150 Hb_004007_170--Hb_004117_150 Hb_006681_020 Hb_006681_020 Hb_004007_170--Hb_006681_020 Hb_004007_170--Hb_000146_030 Hb_004007_170--Hb_001047_180 Hb_004007_170--Hb_004855_070
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
9.82946 6.73537 85.8737 20.5897 3.47362 5.64
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
6.01326 4.3593 4.49778 4.0317 47.0424

CAGE analysis