Hb_000169_090

Information

Type -
Description -
Location Contig169: 73738-79531
Sequence    

Annotation

kegg
ID rcu:RCOM_0556490
description sodium/hydrogen exchanger, putative
nr
ID XP_012082662.1
description PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
swissprot
ID Q56XP4
description Sodium/hydrogen exchanger 2 OS=Arabidopsis thaliana GN=NHX2 PE=2 SV=2
trembl
ID A0A067JW08
description Sodium/hydrogen exchanger OS=Jatropha curcas GN=JCGZ_13853 PE=3 SV=1
Gene Ontology
ID GO:0005774
description sodium hydrogen exchanger 2-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15699: 73908-79464
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_090 0.0 - - PREDICTED: sodium/hydrogen exchanger 2-like [Jatropha curcas]
2 Hb_005054_100 0.0709576238 - - PREDICTED: uncharacterized protein At2g39920 [Jatropha curcas]
3 Hb_004046_020 0.0818002684 - - PREDICTED: F-box/kelch-repeat protein At5g60570-like [Jatropha curcas]
4 Hb_001344_010 0.0828127293 - - PREDICTED: probable E3 ubiquitin-protein ligase ARI11 [Jatropha curcas]
5 Hb_003195_070 0.0832814127 - - Uncharacterized protein isoform 1 [Theobroma cacao]
6 Hb_000898_040 0.0854776334 - - ankyrin repeat-containing protein, putative [Ricinus communis]
7 Hb_003206_070 0.0858156754 - - organic anion transporter, putative [Ricinus communis]
8 Hb_023001_060 0.0875341563 - - PREDICTED: importin-11 [Jatropha curcas]
9 Hb_001691_120 0.0894584494 desease resistance Gene Name: AAA PREDICTED: vesicle-fusing ATPase [Jatropha curcas]
10 Hb_005490_030 0.0906089955 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 2 isoform X3 [Jatropha curcas]
11 Hb_005489_110 0.0923641444 - - PREDICTED: putative transferase CAF17 homolog, mitochondrial [Jatropha curcas]
12 Hb_004117_130 0.0950018407 - - PREDICTED: uncharacterized protein LOC105649104 [Jatropha curcas]
13 Hb_001454_130 0.0950403662 - - Xyloglucan 6-xylosyltransferase, putative [Ricinus communis]
14 Hb_004724_200 0.0982706326 - - PREDICTED: WD-40 repeat-containing protein MSI1 [Jatropha curcas]
15 Hb_000933_090 0.0983267898 - - PREDICTED: probable protein S-acyltransferase 22 [Jatropha curcas]
16 Hb_000358_150 0.0990117464 - - hypothetical protein VITISV_012309 [Vitis vinifera]
17 Hb_002811_060 0.0991462271 - - PREDICTED: protein transport protein Sec24-like At4g32640 [Jatropha curcas]
18 Hb_004109_090 0.099376222 - - ubiquitin-protein ligase, putative [Ricinus communis]
19 Hb_011671_240 0.1000381679 - - PREDICTED: WD repeat-containing protein WRAP73-like [Jatropha curcas]
20 Hb_000409_020 0.1012535945 - - PREDICTED: V-type proton ATPase subunit d2 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_090 Hb_000169_090 Hb_005054_100 Hb_005054_100 Hb_000169_090--Hb_005054_100 Hb_004046_020 Hb_004046_020 Hb_000169_090--Hb_004046_020 Hb_001344_010 Hb_001344_010 Hb_000169_090--Hb_001344_010 Hb_003195_070 Hb_003195_070 Hb_000169_090--Hb_003195_070 Hb_000898_040 Hb_000898_040 Hb_000169_090--Hb_000898_040 Hb_003206_070 Hb_003206_070 Hb_000169_090--Hb_003206_070 Hb_002811_060 Hb_002811_060 Hb_005054_100--Hb_002811_060 Hb_002740_180 Hb_002740_180 Hb_005054_100--Hb_002740_180 Hb_012022_090 Hb_012022_090 Hb_005054_100--Hb_012022_090 Hb_005490_030 Hb_005490_030 Hb_005054_100--Hb_005490_030 Hb_023001_060 Hb_023001_060 Hb_005054_100--Hb_023001_060 Hb_004046_020--Hb_000898_040 Hb_000928_020 Hb_000928_020 Hb_004046_020--Hb_000928_020 Hb_004046_020--Hb_005054_100 Hb_007545_030 Hb_007545_030 Hb_004046_020--Hb_007545_030 Hb_002299_060 Hb_002299_060 Hb_004046_020--Hb_002299_060 Hb_001344_010--Hb_005490_030 Hb_001344_010--Hb_023001_060 Hb_001344_010--Hb_005054_100 Hb_000700_110 Hb_000700_110 Hb_001344_010--Hb_000700_110 Hb_003777_310 Hb_003777_310 Hb_001344_010--Hb_003777_310 Hb_002506_020 Hb_002506_020 Hb_003195_070--Hb_002506_020 Hb_000010_330 Hb_000010_330 Hb_003195_070--Hb_000010_330 Hb_007904_200 Hb_007904_200 Hb_003195_070--Hb_007904_200 Hb_048937_040 Hb_048937_040 Hb_003195_070--Hb_048937_040 Hb_004109_090 Hb_004109_090 Hb_003195_070--Hb_004109_090 Hb_002200_080 Hb_002200_080 Hb_003195_070--Hb_002200_080 Hb_000409_020 Hb_000409_020 Hb_000898_040--Hb_000409_020 Hb_002217_300 Hb_002217_300 Hb_000898_040--Hb_002217_300 Hb_000207_250 Hb_000207_250 Hb_000898_040--Hb_000207_250 Hb_000907_080 Hb_000907_080 Hb_000898_040--Hb_000907_080 Hb_000898_040--Hb_004109_090 Hb_000080_190 Hb_000080_190 Hb_000898_040--Hb_000080_190 Hb_003206_070--Hb_000409_020 Hb_001818_090 Hb_001818_090 Hb_003206_070--Hb_001818_090 Hb_000676_250 Hb_000676_250 Hb_003206_070--Hb_000676_250 Hb_005663_060 Hb_005663_060 Hb_003206_070--Hb_005663_060 Hb_003177_030 Hb_003177_030 Hb_003206_070--Hb_003177_030 Hb_007441_120 Hb_007441_120 Hb_003206_070--Hb_007441_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
68.2894 20.6272 21.5765 61.082 82.9849 88.401
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
65.0382 41.3353 89.0103 52.3878 38.9661

CAGE analysis