Hb_000169_140

Information

Type -
Description -
Location Contig169: 164098-167546
Sequence    

Annotation

kegg
ID rcu:RCOM_1101280
description protein transporter, putative
nr
ID XP_012083898.1
description PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
swissprot
ID -
description -
trembl
ID A0A067JZ27
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_19481 PE=4 SV=1
Gene Ontology
ID GO:0009535
description nuclear transport factor 2 family protein

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15709: 164083-167489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_140 0.0 - - PREDICTED: uncharacterized protein LOC105643397 [Jatropha curcas]
2 Hb_000210_220 0.1329786235 - - hypothetical protein POPTR_0006s22010g [Populus trichocarpa]
3 Hb_003349_080 0.1395576262 - - PREDICTED: uncharacterized protein LOC105628287 [Jatropha curcas]
4 Hb_000529_220 0.1398358313 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000997_360 0.1440783676 - - hypothetical protein AALP_AAs70636U000100 [Arabis alpina]
6 Hb_028487_030 0.146093784 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002260_030 0.1478809454 - - PREDICTED: putative glutamine amidotransferase YLR126C [Jatropha curcas]
8 Hb_007520_010 0.149121753 - - PREDICTED: uncharacterized protein LOC105640383 [Jatropha curcas]
9 Hb_003336_030 0.1495322157 - - transcription factor, putative [Ricinus communis]
10 Hb_061802_010 0.1505069567 - - hypothetical protein VITISV_011986 [Vitis vinifera]
11 Hb_000083_090 0.1533651646 - - immunophilin, putative [Ricinus communis]
12 Hb_010582_010 0.1547325806 - - hypothetical protein POPTR_0011s15670g [Populus trichocarpa]
13 Hb_001136_060 0.1555207265 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
14 Hb_000836_130 0.1558148195 - - PREDICTED: uncharacterized protein LOC105642953 isoform X2 [Jatropha curcas]
15 Hb_162275_030 0.1589662993 - - PREDICTED: uncharacterized protein LOC105646638 [Jatropha curcas]
16 Hb_009393_210 0.1595351236 - - PREDICTED: MHC class II regulatory factor RFX1-like [Jatropha curcas]
17 Hb_001357_120 0.160365209 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
18 Hb_005211_190 0.1608399531 - - PREDICTED: uncharacterized protein LOC105641994 [Jatropha curcas]
19 Hb_071947_010 0.1614025574 - - -
20 Hb_000318_160 0.1622704516 - - PREDICTED: uncharacterized protein LOC105634239 [Jatropha curcas]

Gene co-expression network

sample Hb_000169_140 Hb_000169_140 Hb_000210_220 Hb_000210_220 Hb_000169_140--Hb_000210_220 Hb_003349_080 Hb_003349_080 Hb_000169_140--Hb_003349_080 Hb_000529_220 Hb_000529_220 Hb_000169_140--Hb_000529_220 Hb_000997_360 Hb_000997_360 Hb_000169_140--Hb_000997_360 Hb_028487_030 Hb_028487_030 Hb_000169_140--Hb_028487_030 Hb_002260_030 Hb_002260_030 Hb_000169_140--Hb_002260_030 Hb_138585_050 Hb_138585_050 Hb_000210_220--Hb_138585_050 Hb_001083_020 Hb_001083_020 Hb_000210_220--Hb_001083_020 Hb_001491_010 Hb_001491_010 Hb_000210_220--Hb_001491_010 Hb_000210_220--Hb_003349_080 Hb_061802_010 Hb_061802_010 Hb_000210_220--Hb_061802_010 Hb_000979_200 Hb_000979_200 Hb_000210_220--Hb_000979_200 Hb_000318_160 Hb_000318_160 Hb_003349_080--Hb_000318_160 Hb_000224_140 Hb_000224_140 Hb_003349_080--Hb_000224_140 Hb_003050_280 Hb_003050_280 Hb_003349_080--Hb_003050_280 Hb_068056_030 Hb_068056_030 Hb_003349_080--Hb_068056_030 Hb_000680_140 Hb_000680_140 Hb_003349_080--Hb_000680_140 Hb_002918_290 Hb_002918_290 Hb_003349_080--Hb_002918_290 Hb_000272_140 Hb_000272_140 Hb_000529_220--Hb_000272_140 Hb_000672_120 Hb_000672_120 Hb_000529_220--Hb_000672_120 Hb_008544_010 Hb_008544_010 Hb_000529_220--Hb_008544_010 Hb_162275_030 Hb_162275_030 Hb_000529_220--Hb_162275_030 Hb_000329_180 Hb_000329_180 Hb_000529_220--Hb_000329_180 Hb_000125_210 Hb_000125_210 Hb_000997_360--Hb_000125_210 Hb_000635_210 Hb_000635_210 Hb_000997_360--Hb_000635_210 Hb_001218_040 Hb_001218_040 Hb_000997_360--Hb_001218_040 Hb_021443_080 Hb_021443_080 Hb_000997_360--Hb_021443_080 Hb_001775_110 Hb_001775_110 Hb_000997_360--Hb_001775_110 Hb_011512_040 Hb_011512_040 Hb_000997_360--Hb_011512_040 Hb_011671_390 Hb_011671_390 Hb_028487_030--Hb_011671_390 Hb_001616_030 Hb_001616_030 Hb_028487_030--Hb_001616_030 Hb_028487_030--Hb_000680_140 Hb_028487_030--Hb_001218_040 Hb_028486_030 Hb_028486_030 Hb_028487_030--Hb_028486_030 Hb_153112_030 Hb_153112_030 Hb_028487_030--Hb_153112_030 Hb_001357_120 Hb_001357_120 Hb_002260_030--Hb_001357_120 Hb_002774_050 Hb_002774_050 Hb_002260_030--Hb_002774_050 Hb_000914_170 Hb_000914_170 Hb_002260_030--Hb_000914_170 Hb_008948_100 Hb_008948_100 Hb_002260_030--Hb_008948_100 Hb_000175_030 Hb_000175_030 Hb_002260_030--Hb_000175_030 Hb_000705_290 Hb_000705_290 Hb_002260_030--Hb_000705_290
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
22.2547 9.25887 9.63719 15.9503 15.2802 23.5835
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
132.715 80.4451 77.6746 15.0176 57.056

CAGE analysis