Hb_000169_190

Information

Type desease resistance
Description Gene Name: AAA_17
Location Contig169: 277955-282461
Sequence    

Annotation

kegg
ID tcc:TCM_001534
description Uncharacterized protein isoform 1
nr
ID XP_012090912.1
description PREDICTED: protein SMG9-like [Jatropha curcas]
swissprot
ID Q9M9M9
description Probable NADH dehydrogenase [ubiquinone] 1 alpha subcomplex subunit 12 OS=Arabidopsis thaliana GN=At3g03100 PE=1 SV=1
trembl
ID A0A067JD58
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_00558 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15714: 278102-280489
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000169_190 0.0 desease resistance Gene Name: AAA_17 PREDICTED: protein SMG9-like [Jatropha curcas]
2 Hb_012184_050 0.1011779448 - - hypothetical protein POPTR_0008s01610g [Populus trichocarpa]
3 Hb_027472_210 0.1224159578 - - PREDICTED: uncharacterized protein LOC105646181 [Jatropha curcas]
4 Hb_188996_010 0.1258174677 - - conserved hypothetical protein [Ricinus communis]
5 Hb_007123_070 0.1335623395 - - -
6 Hb_027402_090 0.1362333878 - - endonuclease, putative [Ricinus communis]
7 Hb_058551_010 0.1378877536 - - PREDICTED: choline monooxygenase, chloroplastic isoform X2 [Jatropha curcas]
8 Hb_000258_320 0.1411799648 - - -
9 Hb_007083_010 0.1459448089 - - PREDICTED: ubiquitin carboxyl-terminal hydrolase 13-like, partial [Nelumbo nucifera]
10 Hb_000173_150 0.1475070095 - - PREDICTED: transmembrane protein 64 [Jatropha curcas]
11 Hb_005155_020 0.1476753943 - - -
12 Hb_000045_320 0.1484258276 - - PREDICTED: uncharacterized protein LOC105646630 isoform X1 [Jatropha curcas]
13 Hb_002805_170 0.1505539562 - - exosome complex exonuclease rrp45, putative [Ricinus communis]
14 Hb_001269_200 0.1514887278 - - pentatricopeptide repeat-containing family protein [Populus trichocarpa]
15 Hb_000563_330 0.1528821609 - - DAG protein, chloroplast precursor, putative [Ricinus communis]
16 Hb_007951_100 0.1535303364 - - PREDICTED: peptide deformylase 1A, chloroplastic/mitochondrial [Jatropha curcas]
17 Hb_000099_090 0.1575896958 - - Na(+)/H(+) antiporter, putative [Ricinus communis]
18 Hb_000504_170 0.1618160724 - - hypothetical protein B456_006G033900 [Gossypium raimondii]
19 Hb_016734_090 0.1619798486 - - PREDICTED: ATPase family AAA domain-containing protein 3-like [Jatropha curcas]
20 Hb_121729_020 0.1628427885 - - DNA binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000169_190 Hb_000169_190 Hb_012184_050 Hb_012184_050 Hb_000169_190--Hb_012184_050 Hb_027472_210 Hb_027472_210 Hb_000169_190--Hb_027472_210 Hb_188996_010 Hb_188996_010 Hb_000169_190--Hb_188996_010 Hb_007123_070 Hb_007123_070 Hb_000169_190--Hb_007123_070 Hb_027402_090 Hb_027402_090 Hb_000169_190--Hb_027402_090 Hb_058551_010 Hb_058551_010 Hb_000169_190--Hb_058551_010 Hb_002805_170 Hb_002805_170 Hb_012184_050--Hb_002805_170 Hb_000045_320 Hb_000045_320 Hb_012184_050--Hb_000045_320 Hb_121729_020 Hb_121729_020 Hb_012184_050--Hb_121729_020 Hb_007951_100 Hb_007951_100 Hb_012184_050--Hb_007951_100 Hb_005695_060 Hb_005695_060 Hb_012184_050--Hb_005695_060 Hb_063805_010 Hb_063805_010 Hb_027472_210--Hb_063805_010 Hb_092337_020 Hb_092337_020 Hb_027472_210--Hb_092337_020 Hb_000563_330 Hb_000563_330 Hb_027472_210--Hb_000563_330 Hb_007083_010 Hb_007083_010 Hb_027472_210--Hb_007083_010 Hb_005291_040 Hb_005291_040 Hb_027472_210--Hb_005291_040 Hb_188996_010--Hb_007123_070 Hb_000453_040 Hb_000453_040 Hb_188996_010--Hb_000453_040 Hb_003994_140 Hb_003994_140 Hb_188996_010--Hb_003994_140 Hb_010053_040 Hb_010053_040 Hb_188996_010--Hb_010053_040 Hb_003891_070 Hb_003891_070 Hb_188996_010--Hb_003891_070 Hb_000152_230 Hb_000152_230 Hb_007123_070--Hb_000152_230 Hb_007123_070--Hb_092337_020 Hb_000175_090 Hb_000175_090 Hb_007123_070--Hb_000175_090 Hb_007123_070--Hb_000563_330 Hb_089889_020 Hb_089889_020 Hb_007123_070--Hb_089889_020 Hb_000529_210 Hb_000529_210 Hb_007123_070--Hb_000529_210 Hb_000265_220 Hb_000265_220 Hb_027402_090--Hb_000265_220 Hb_002708_020 Hb_002708_020 Hb_027402_090--Hb_002708_020 Hb_149838_010 Hb_149838_010 Hb_027402_090--Hb_149838_010 Hb_016734_090 Hb_016734_090 Hb_027402_090--Hb_016734_090 Hb_000809_210 Hb_000809_210 Hb_027402_090--Hb_000809_210 Hb_058551_010--Hb_000563_330 Hb_058551_010--Hb_003994_140 Hb_000173_150 Hb_000173_150 Hb_058551_010--Hb_000173_150 Hb_000069_590 Hb_000069_590 Hb_058551_010--Hb_000069_590 Hb_039605_010 Hb_039605_010 Hb_058551_010--Hb_039605_010 Hb_000735_050 Hb_000735_050 Hb_058551_010--Hb_000735_050
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
20.8644 14.3108 20.9492 6.02335 18.6214 13.7509
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
4.92574 4.66613 0.966952 1.93351 1.43224

CAGE analysis