Hb_000170_010

Information

Type -
Description -
Location Contig170: 12158-18047
Sequence    

Annotation

kegg
ID rcu:RCOM_0561350
description o-methyltransferase, putative (EC:2.1.1.68)
nr
ID XP_002520291.1
description o-methyltransferase, putative [Ricinus communis]
swissprot
ID Q8W013
description Caffeic acid 3-O-methyltransferase OS=Catharanthus roseus GN=COMT1 PE=2 SV=1
trembl
ID B9S2S2
description O-methyltransferase, putative OS=Ricinus communis GN=RCOM_0561350 PE=4 SV=1
Gene Ontology
ID GO:0046983
description caffeic acid 3-o-methyltransferase-like

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15857: 16073-16262
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_010 0.0 - - o-methyltransferase, putative [Ricinus communis]
2 Hb_004837_140 0.0437533822 - - hypothetical protein PRUPE_ppa012469mg [Prunus persica]
3 Hb_002963_010 0.0520253695 - - PREDICTED: autophagy-related protein 18b-like isoform X1 [Jatropha curcas]
4 Hb_005432_030 0.0524520118 - - PREDICTED: ABSCISIC ACID-INSENSITIVE 5-like protein 7 [Gossypium raimondii]
5 Hb_000625_070 0.0619006158 transcription factor TF Family: CSD PREDICTED: cold shock domain-containing protein 3 [Jatropha curcas]
6 Hb_012338_010 0.0635245096 - - conserved hypothetical protein [Ricinus communis]
7 Hb_002918_200 0.066726699 - - -
8 Hb_000834_270 0.0674237789 - - PREDICTED: uncharacterized protein LOC105647032 isoform X2 [Jatropha curcas]
9 Hb_003020_230 0.06753346 - - DNA-directed RNA polymerase II subunit RPB7 [Glycine max]
10 Hb_005997_010 0.0682998659 - - Dihydroorotate dehydrogenase (quinone) [Morus notabilis]
11 Hb_000329_310 0.0692690873 - - PREDICTED: phosphatidate cytidylyltransferase 4, chloroplastic [Jatropha curcas]
12 Hb_002716_070 0.0717990335 - - PREDICTED: protein ABIL2 [Jatropha curcas]
13 Hb_002027_210 0.0719624992 - - Histidine-containing phosphotransfer protein, putative [Ricinus communis]
14 Hb_000120_750 0.0726685046 desease resistance Gene Name: NTPase_1 ATP binding protein, putative [Ricinus communis]
15 Hb_004108_230 0.0739167599 - - PREDICTED: 6.7 kDa chloroplast outer envelope membrane protein-like [Jatropha curcas]
16 Hb_001383_060 0.0743371324 - - PREDICTED: calmodulin-7 isoform X1 [Vitis vinifera]
17 Hb_003175_040 0.0749911121 - - PREDICTED: katanin p60 ATPase-containing subunit A1 isoform X1 [Jatropha curcas]
18 Hb_000146_020 0.0761809399 - - PREDICTED: protein TIC 21, chloroplastic [Jatropha curcas]
19 Hb_000340_140 0.0766536759 - - PREDICTED: BTB/POZ and MATH domain-containing protein 2-like [Vitis vinifera]
20 Hb_003927_130 0.0772353876 - - PREDICTED: nudix hydrolase 9 [Phoenix dactylifera]

Gene co-expression network

sample Hb_000170_010 Hb_000170_010 Hb_004837_140 Hb_004837_140 Hb_000170_010--Hb_004837_140 Hb_002963_010 Hb_002963_010 Hb_000170_010--Hb_002963_010 Hb_005432_030 Hb_005432_030 Hb_000170_010--Hb_005432_030 Hb_000625_070 Hb_000625_070 Hb_000170_010--Hb_000625_070 Hb_012338_010 Hb_012338_010 Hb_000170_010--Hb_012338_010 Hb_002918_200 Hb_002918_200 Hb_000170_010--Hb_002918_200 Hb_004837_140--Hb_002918_200 Hb_004837_140--Hb_002963_010 Hb_004108_230 Hb_004108_230 Hb_004837_140--Hb_004108_230 Hb_005997_010 Hb_005997_010 Hb_004837_140--Hb_005997_010 Hb_004837_140--Hb_012338_010 Hb_159809_020 Hb_159809_020 Hb_002963_010--Hb_159809_020 Hb_000834_270 Hb_000834_270 Hb_002963_010--Hb_000834_270 Hb_000574_480 Hb_000574_480 Hb_002963_010--Hb_000574_480 Hb_001722_100 Hb_001722_100 Hb_002963_010--Hb_001722_100 Hb_002027_210 Hb_002027_210 Hb_005432_030--Hb_002027_210 Hb_005432_030--Hb_000625_070 Hb_000496_060 Hb_000496_060 Hb_005432_030--Hb_000496_060 Hb_005432_030--Hb_004108_230 Hb_003175_040 Hb_003175_040 Hb_005432_030--Hb_003175_040 Hb_000625_070--Hb_002027_210 Hb_000025_120 Hb_000025_120 Hb_000625_070--Hb_000025_120 Hb_004724_340 Hb_004724_340 Hb_000625_070--Hb_004724_340 Hb_000146_020 Hb_000146_020 Hb_000625_070--Hb_000146_020 Hb_000300_610 Hb_000300_610 Hb_012338_010--Hb_000300_610 Hb_012338_010--Hb_004108_230 Hb_000061_320 Hb_000061_320 Hb_012338_010--Hb_000061_320 Hb_012338_010--Hb_005432_030 Hb_002918_200--Hb_004108_230 Hb_002918_200--Hb_000834_270 Hb_002918_200--Hb_003175_040 Hb_002918_200--Hb_002027_210
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
7.33269 2.89971 1.93115 3.53394 7.65706 9.31607
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
14.8867 15.7102 10.9312 4.60331 4.01706

CAGE analysis