Hb_000170_100

Information

Type transcription factor
Description TF Family: C3H
Location Contig170: 112794-123508
Sequence    

Annotation

kegg
ID rcu:RCOM_0561570
description protein with unknown function
nr
ID KDP32867.1
description hypothetical protein JCGZ_12159 [Jatropha curcas]
swissprot
ID Q3ED78
description Zinc finger CCCH domain-containing protein 7 OS=Arabidopsis thaliana GN=At1g21570 PE=1 SV=1
trembl
ID A0A067K9S4
description Uncharacterized protein OS=Jatropha curcas GN=JCGZ_12159 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15864: 116416-116599 , PASA_asmbl_15865: 113921-114146 , PASA_asmbl_15866: 112861-117180 , PASA_asmbl_15868: 118514-119095 , PASA_asmbl_15873: 121504-122310
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_100 0.0 transcription factor TF Family: C3H hypothetical protein JCGZ_12159 [Jatropha curcas]
2 Hb_003604_050 0.0772121597 - - PREDICTED: MAP3K epsilon protein kinase 1-like isoform X2 [Jatropha curcas]
3 Hb_012490_010 0.0775896732 - - PREDICTED: uncharacterized protein LOC105637916 isoform X2 [Jatropha curcas]
4 Hb_001951_170 0.0785005194 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
5 Hb_000428_030 0.0796003194 - - hypothetical protein RCOM_1520720 [Ricinus communis]
6 Hb_000200_110 0.0832202015 - - PREDICTED: ATP-dependent RNA helicase DHX36 isoform X1 [Jatropha curcas]
7 Hb_001341_160 0.0832860467 - - PREDICTED: E3 SUMO-protein ligase SIZ1 isoform X2 [Jatropha curcas]
8 Hb_006531_020 0.0843691755 - - PREDICTED: autophagy-related protein 13 [Jatropha curcas]
9 Hb_171554_040 0.0857108925 - - PREDICTED: phytanoyl-CoA dioxygenase [Populus euphratica]
10 Hb_001904_030 0.086037628 - - PREDICTED: importin-5 [Jatropha curcas]
11 Hb_002005_030 0.0865851306 - - PREDICTED: uncharacterized protein LOC105649755 [Jatropha curcas]
12 Hb_003216_090 0.0873559229 - - PREDICTED: nuclear pore complex protein NUP133 isoform X1 [Jatropha curcas]
13 Hb_033799_010 0.0874541859 - - PREDICTED: uncharacterized protein LOC105637564 [Jatropha curcas]
14 Hb_005765_040 0.0874625411 - - transcription elongation factor s-II, putative [Ricinus communis]
15 Hb_005408_030 0.0879072437 - - PREDICTED: uncharacterized protein LOC105648043 [Jatropha curcas]
16 Hb_000010_420 0.0896313818 - - Callose synthase 10 [Morus notabilis]
17 Hb_004551_020 0.0900019252 - - PREDICTED: polyadenylation and cleavage factor homolog 4 [Jatropha curcas]
18 Hb_000934_210 0.0904693643 - - suppressor of ty, putative [Ricinus communis]
19 Hb_007012_040 0.0914216877 transcription factor TF Family: C3H PREDICTED: zinc finger CCCH domain-containing protein 44 [Jatropha curcas]
20 Hb_000009_410 0.0917177913 transcription factor TF Family: SET hypothetical protein POPTR_0007s12130g [Populus trichocarpa]

Gene co-expression network

sample Hb_000170_100 Hb_000170_100 Hb_003604_050 Hb_003604_050 Hb_000170_100--Hb_003604_050 Hb_012490_010 Hb_012490_010 Hb_000170_100--Hb_012490_010 Hb_001951_170 Hb_001951_170 Hb_000170_100--Hb_001951_170 Hb_000428_030 Hb_000428_030 Hb_000170_100--Hb_000428_030 Hb_000200_110 Hb_000200_110 Hb_000170_100--Hb_000200_110 Hb_001341_160 Hb_001341_160 Hb_000170_100--Hb_001341_160 Hb_001904_030 Hb_001904_030 Hb_003604_050--Hb_001904_030 Hb_003604_050--Hb_001341_160 Hb_000479_240 Hb_000479_240 Hb_003604_050--Hb_000479_240 Hb_005832_010 Hb_005832_010 Hb_003604_050--Hb_005832_010 Hb_002928_190 Hb_002928_190 Hb_003604_050--Hb_002928_190 Hb_004785_030 Hb_004785_030 Hb_003604_050--Hb_004785_030 Hb_004696_070 Hb_004696_070 Hb_012490_010--Hb_004696_070 Hb_008686_020 Hb_008686_020 Hb_012490_010--Hb_008686_020 Hb_012490_010--Hb_002928_190 Hb_004551_020 Hb_004551_020 Hb_012490_010--Hb_004551_020 Hb_020805_150 Hb_020805_150 Hb_012490_010--Hb_020805_150 Hb_003216_090 Hb_003216_090 Hb_001951_170--Hb_003216_090 Hb_001951_170--Hb_005832_010 Hb_006031_010 Hb_006031_010 Hb_001951_170--Hb_006031_010 Hb_006531_020 Hb_006531_020 Hb_001951_170--Hb_006531_020 Hb_002007_110 Hb_002007_110 Hb_001951_170--Hb_002007_110 Hb_000331_580 Hb_000331_580 Hb_001951_170--Hb_000331_580 Hb_000260_760 Hb_000260_760 Hb_000428_030--Hb_000260_760 Hb_002078_470 Hb_002078_470 Hb_000428_030--Hb_002078_470 Hb_000331_100 Hb_000331_100 Hb_000428_030--Hb_000331_100 Hb_008165_020 Hb_008165_020 Hb_000428_030--Hb_008165_020 Hb_000428_030--Hb_004551_020 Hb_000428_030--Hb_000200_110 Hb_001477_020 Hb_001477_020 Hb_000200_110--Hb_001477_020 Hb_000220_120 Hb_000220_120 Hb_000200_110--Hb_000220_120 Hb_000243_400 Hb_000243_400 Hb_000200_110--Hb_000243_400 Hb_000200_110--Hb_000331_100 Hb_143629_020 Hb_143629_020 Hb_000200_110--Hb_143629_020 Hb_000172_340 Hb_000172_340 Hb_001341_160--Hb_000172_340 Hb_000010_420 Hb_000010_420 Hb_001341_160--Hb_000010_420 Hb_001341_160--Hb_001904_030 Hb_004223_160 Hb_004223_160 Hb_001341_160--Hb_004223_160 Hb_008948_140 Hb_008948_140 Hb_001341_160--Hb_008948_140
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
2.00666 12.7604 4.54124 5.51727 4.58606 4.20132
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
1.98657 2.6459 3.44788 8.07728 7.2992

CAGE analysis