Hb_000170_130

Information

Type transcription factor
Description TF Family: SET
Location Contig170: 152625-172745
Sequence    

Annotation

kegg
ID rcu:RCOM_0561810
description huntingtin interacting protein, putative (EC:2.1.1.43)
nr
ID XP_012078323.1
description PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
swissprot
ID Q2LAE1
description Histone-lysine N-methyltransferase ASHH2 OS=Arabidopsis thaliana GN=ASHH2 PE=1 SV=1
trembl
ID A0A067KCX7
description Histone-lysine N-methyltransferase OS=Jatropha curcas GN=JCGZ_12155 PE=4 SV=1
Gene Ontology
ID GO:0008168
description histone-lysine n-methyltransferase ashh2-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15876: 152624-171611 , PASA_asmbl_15878: 172387-172803
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_130 0.0 transcription factor TF Family: SET PREDICTED: histone-lysine N-methyltransferase ASHH2 [Jatropha curcas]
2 Hb_011671_410 0.0634619083 transcription factor TF Family: SET histone-lysine n-methyltransferase, suvh, putative [Ricinus communis]
3 Hb_012506_040 0.0685338678 transcription factor TF Family: DDT PREDICTED: uncharacterized protein LOC105637346 [Jatropha curcas]
4 Hb_002686_090 0.0744198169 - - PREDICTED: pentatricopeptide repeat-containing protein At4g13650 [Jatropha curcas]
5 Hb_002542_110 0.0822605782 - - PREDICTED: uncharacterized protein LOC105642479 [Jatropha curcas]
6 Hb_006816_370 0.0837279939 transcription factor TF Family: PHD PREDICTED: uncharacterized protein LOC105647456 [Jatropha curcas]
7 Hb_062226_070 0.0857472306 transcription factor TF Family: FAR1 PREDICTED: protein FAR1-RELATED SEQUENCE 4 isoform X1 [Jatropha curcas]
8 Hb_004204_010 0.086270758 - - PREDICTED: uncharacterized protein LOC105640608 [Jatropha curcas]
9 Hb_001405_070 0.0884168808 - - PREDICTED: pentatricopeptide repeat-containing protein At3g23020 [Jatropha curcas]
10 Hb_005701_130 0.0886797684 transcription factor TF Family: SWI/SNF-SWI3 PREDICTED: lysine-specific histone demethylase 1 homolog 3 [Jatropha curcas]
11 Hb_001488_180 0.0887351395 - - PREDICTED: uncharacterized protein LOC105644152 isoform X1 [Jatropha curcas]
12 Hb_001563_010 0.089064189 transcription factor TF Family: SET PREDICTED: probable histone-lysine N-methyltransferase ATXR3 [Jatropha curcas]
13 Hb_000204_120 0.0894243512 - - PREDICTED: uncharacterized protein LOC105639239 [Jatropha curcas]
14 Hb_005486_030 0.0908474878 transcription factor TF Family: PHD hypothetical protein POPTR_0017s10890g [Populus trichocarpa]
15 Hb_000465_280 0.0911846423 - - PREDICTED: pentatricopeptide repeat-containing protein At5g47360 [Jatropha curcas]
16 Hb_000672_040 0.0924738916 - - PREDICTED: ENHANCER OF AG-4 protein 2 [Jatropha curcas]
17 Hb_000417_200 0.0926542423 - - PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein DOT4, chloroplastic [Jatropha curcas]
18 Hb_002157_080 0.0948950388 - - PREDICTED: uncharacterized protein LOC105628780 isoform X2 [Jatropha curcas]
19 Hb_005977_070 0.0956510959 - - PREDICTED: probable helicase MAGATAMA 3 isoform X1 [Jatropha curcas]
20 Hb_000640_040 0.0962206287 - - PREDICTED: bromodomain and WD repeat-containing protein 1 isoform X2 [Jatropha curcas]

Gene co-expression network

sample Hb_000170_130 Hb_000170_130 Hb_011671_410 Hb_011671_410 Hb_000170_130--Hb_011671_410 Hb_012506_040 Hb_012506_040 Hb_000170_130--Hb_012506_040 Hb_002686_090 Hb_002686_090 Hb_000170_130--Hb_002686_090 Hb_002542_110 Hb_002542_110 Hb_000170_130--Hb_002542_110 Hb_006816_370 Hb_006816_370 Hb_000170_130--Hb_006816_370 Hb_062226_070 Hb_062226_070 Hb_000170_130--Hb_062226_070 Hb_005736_020 Hb_005736_020 Hb_011671_410--Hb_005736_020 Hb_000204_120 Hb_000204_120 Hb_011671_410--Hb_000204_120 Hb_000672_040 Hb_000672_040 Hb_011671_410--Hb_000672_040 Hb_011671_410--Hb_062226_070 Hb_001999_290 Hb_001999_290 Hb_011671_410--Hb_001999_290 Hb_000465_280 Hb_000465_280 Hb_012506_040--Hb_000465_280 Hb_012506_040--Hb_002686_090 Hb_001865_070 Hb_001865_070 Hb_012506_040--Hb_001865_070 Hb_004374_110 Hb_004374_110 Hb_012506_040--Hb_004374_110 Hb_005701_130 Hb_005701_130 Hb_012506_040--Hb_005701_130 Hb_000640_040 Hb_000640_040 Hb_002686_090--Hb_000640_040 Hb_002686_090--Hb_001865_070 Hb_002686_090--Hb_000204_120 Hb_001716_040 Hb_001716_040 Hb_002686_090--Hb_001716_040 Hb_002686_090--Hb_002542_110 Hb_002542_110--Hb_000640_040 Hb_010068_080 Hb_010068_080 Hb_002542_110--Hb_010068_080 Hb_002542_110--Hb_001716_040 Hb_002157_080 Hb_002157_080 Hb_002542_110--Hb_002157_080 Hb_001488_180 Hb_001488_180 Hb_002542_110--Hb_001488_180 Hb_001563_010 Hb_001563_010 Hb_006816_370--Hb_001563_010 Hb_001648_020 Hb_001648_020 Hb_006816_370--Hb_001648_020 Hb_001005_130 Hb_001005_130 Hb_006816_370--Hb_001005_130 Hb_000538_280 Hb_000538_280 Hb_006816_370--Hb_000538_280 Hb_000193_330 Hb_000193_330 Hb_006816_370--Hb_000193_330 Hb_003494_020 Hb_003494_020 Hb_062226_070--Hb_003494_020 Hb_000028_130 Hb_000028_130 Hb_062226_070--Hb_000028_130 Hb_000174_270 Hb_000174_270 Hb_062226_070--Hb_000174_270 Hb_004079_060 Hb_004079_060 Hb_062226_070--Hb_004079_060 Hb_062226_070--Hb_001999_290 Hb_005582_040 Hb_005582_040 Hb_062226_070--Hb_005582_040
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.24682 11.2266 4.95447 5.51512 3.72804 5.88059
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.61971 5.67222 8.37086 4.99337 13.8076

CAGE analysis