Hb_000170_160

Information

Type -
Description -
Location Contig170: 242209-250071
Sequence    

Annotation

kegg
ID rcu:RCOM_0562160
description poly(p)/ATP NAD kinase, putative (EC:2.7.1.23)
nr
ID XP_012078316.1
description PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
swissprot
ID Q9C5W3
description NAD kinase 2, chloroplastic OS=Arabidopsis thaliana GN=NADK2 PE=1 SV=1
trembl
ID E6NU77
description JMS09K11.5 protein OS=Jatropha curcas GN=JMS09K11.5 PE=3 SV=1
Gene Ontology
ID GO:0003951
description nad kinase chloroplastic-like isoform x1

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 PASA_asmbl_15882: 242212-249684 , PASA_asmbl_15883: 242212-250039 , PASA_asmbl_15885: 245938-246170
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_160 0.0 - - PREDICTED: NAD kinase 2, chloroplastic [Jatropha curcas]
2 Hb_013405_180 0.089467564 - - PREDICTED: uncharacterized protein LOC105648441 [Jatropha curcas]
3 Hb_003750_130 0.1024486366 - - conserved hypothetical protein [Ricinus communis]
4 Hb_000008_280 0.1079691846 - - PREDICTED: double-stranded RNA-binding protein 2 [Jatropha curcas]
5 Hb_001998_210 0.1093265515 - - unnamed protein product [Coffea canephora]
6 Hb_021079_020 0.1094648403 - - PREDICTED: uncharacterized protein LOC105648580 [Jatropha curcas]
7 Hb_000673_010 0.112045369 - - PREDICTED: uncharacterized protein LOC105636554 isoform X1 [Jatropha curcas]
8 Hb_004052_110 0.1145915905 - - PREDICTED: host cell factor 2 isoform X1 [Jatropha curcas]
9 Hb_002248_120 0.1150703843 - - PREDICTED: probable serine/threonine-protein kinase At1g54610 [Jatropha curcas]
10 Hb_003734_080 0.117110646 - - myosin vIII, putative [Ricinus communis]
11 Hb_005183_140 0.1196507447 - - PREDICTED: protein WEAK CHLOROPLAST MOVEMENT UNDER BLUE LIGHT 1-like [Jatropha curcas]
12 Hb_001277_340 0.1211341387 - - aldo/keto reductase, putative [Ricinus communis]
13 Hb_000753_140 0.1225527822 - - PREDICTED: uncharacterized protein LOC105640672 [Jatropha curcas]
14 Hb_000340_360 0.1232292952 - - PREDICTED: probable LRR receptor-like serine/threonine-protein kinase RKF3 [Jatropha curcas]
15 Hb_004994_350 0.1259448993 - - PREDICTED: UPF0187 protein At3g61320, chloroplastic [Jatropha curcas]
16 Hb_005332_140 0.1266427948 - - PREDICTED: uncharacterized membrane protein At3g27390 isoform X2 [Jatropha curcas]
17 Hb_000815_310 0.1275926695 - - protein kinase, putative [Ricinus communis]
18 Hb_005885_030 0.1283012807 desease resistance Gene Name: TIR PREDICTED: protein SUPPRESSOR OF npr1-1, CONSTITUTIVE 1-like [Jatropha curcas]
19 Hb_002249_030 0.128515334 - - PREDICTED: chaperone protein ClpC, chloroplastic [Jatropha curcas]
20 Hb_000529_130 0.1286809464 - - hypothetical protein POPTR_0007s14320g [Populus trichocarpa]

Gene co-expression network

sample Hb_000170_160 Hb_000170_160 Hb_013405_180 Hb_013405_180 Hb_000170_160--Hb_013405_180 Hb_003750_130 Hb_003750_130 Hb_000170_160--Hb_003750_130 Hb_000008_280 Hb_000008_280 Hb_000170_160--Hb_000008_280 Hb_001998_210 Hb_001998_210 Hb_000170_160--Hb_001998_210 Hb_021079_020 Hb_021079_020 Hb_000170_160--Hb_021079_020 Hb_000673_010 Hb_000673_010 Hb_000170_160--Hb_000673_010 Hb_002248_120 Hb_002248_120 Hb_013405_180--Hb_002248_120 Hb_013405_180--Hb_000008_280 Hb_000340_360 Hb_000340_360 Hb_013405_180--Hb_000340_360 Hb_013405_180--Hb_001998_210 Hb_001951_100 Hb_001951_100 Hb_013405_180--Hb_001951_100 Hb_001277_340 Hb_001277_340 Hb_003750_130--Hb_001277_340 Hb_003750_130--Hb_000673_010 Hb_001766_070 Hb_001766_070 Hb_003750_130--Hb_001766_070 Hb_001828_120 Hb_001828_120 Hb_003750_130--Hb_001828_120 Hb_003750_130--Hb_000008_280 Hb_008642_060 Hb_008642_060 Hb_000008_280--Hb_008642_060 Hb_000300_030 Hb_000300_030 Hb_000008_280--Hb_000300_030 Hb_000358_220 Hb_000358_220 Hb_000008_280--Hb_000358_220 Hb_000179_190 Hb_000179_190 Hb_000008_280--Hb_000179_190 Hb_011457_140 Hb_011457_140 Hb_000008_280--Hb_011457_140 Hb_001414_010 Hb_001414_010 Hb_001998_210--Hb_001414_010 Hb_001439_070 Hb_001439_070 Hb_001998_210--Hb_001439_070 Hb_001059_060 Hb_001059_060 Hb_001998_210--Hb_001059_060 Hb_004052_110 Hb_004052_110 Hb_001998_210--Hb_004052_110 Hb_009078_020 Hb_009078_020 Hb_001998_210--Hb_009078_020 Hb_001998_210--Hb_000300_030 Hb_000376_210 Hb_000376_210 Hb_021079_020--Hb_000376_210 Hb_001221_300 Hb_001221_300 Hb_021079_020--Hb_001221_300 Hb_013399_090 Hb_013399_090 Hb_021079_020--Hb_013399_090 Hb_021079_020--Hb_000340_360 Hb_015778_060 Hb_015778_060 Hb_021079_020--Hb_015778_060 Hb_000673_010--Hb_001766_070 Hb_008120_040 Hb_008120_040 Hb_000673_010--Hb_008120_040 Hb_005235_070 Hb_005235_070 Hb_000673_010--Hb_005235_070 Hb_000137_010 Hb_000137_010 Hb_000673_010--Hb_000137_010 Hb_000603_190 Hb_000603_190 Hb_000673_010--Hb_000603_190 Hb_001409_060 Hb_001409_060 Hb_000673_010--Hb_001409_060
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.67025 26.6071 20.043 14.7223 5.99818 4.67495
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
3.68597 4.31484 3.04552 4.9923 24.4211

CAGE analysis