Hb_000170_170

Information

Type -
Description -
Location Contig170: 251629-254896
Sequence    

Annotation

kegg
ID rcu:RCOM_0562170
description 1-aminocyclopropane-1-carboxylate oxidase, putative (EC:1.14.17.4)
nr
ID XP_012078315.1
description PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
swissprot
ID Q0WPW4
description 1-aminocyclopropane-1-carboxylate oxidase 5 OS=Arabidopsis thaliana GN=At1g77330 PE=2 SV=1
trembl
ID E6NU76
description JMS09K11.4 protein OS=Jatropha curcas GN=JMS09K11.4 PE=3 SV=1
Gene Ontology
ID GO:0009815
description 1-aminocyclopropane-1-carboxylate oxidase 5

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_170 0.0 - - PREDICTED: 1-aminocyclopropane-1-carboxylate oxidase 5 [Jatropha curcas]
2 Hb_020259_020 0.0936416584 - - PREDICTED: phosphatidylinositol 4-phosphate 5-kinase 4 [Jatropha curcas]
3 Hb_010866_020 0.1963145291 - - unnamed protein product [Vitis vinifera]
4 Hb_005870_010 0.2010165997 - - -
5 Hb_006469_110 0.2156112195 - - hypothetical protein JCGZ_12008 [Jatropha curcas]
6 Hb_002309_030 0.220382053 - - Glycerol dehydrogenase large subunit, putative [Theobroma cacao]
7 Hb_004308_010 0.2587394242 - - hypothetical protein CISIN_1g0004672mg, partial [Citrus sinensis]
8 Hb_004308_020 0.2628317225 - - hypothetical protein POPTR_0005s15590g [Populus trichocarpa]
9 Hb_001431_100 0.2639795403 - - PREDICTED: probable protein phosphatase 2C 27 [Jatropha curcas]
10 Hb_000347_520 0.264451972 transcription factor TF Family: AP2 hypothetical protein JCGZ_24704 [Jatropha curcas]
11 Hb_149985_020 0.2677973192 - - PREDICTED: zeatin O-glucosyltransferase-like [Nicotiana tomentosiformis]
12 Hb_087388_010 0.2719715254 transcription factor TF Family: bHLH PREDICTED: transcription factor DYT1 [Jatropha curcas]
13 Hb_000291_170 0.2738223123 - - PREDICTED: inactive rhomboid protein 1 isoform X1 [Jatropha curcas]
14 Hb_003906_020 0.2884641696 - - PREDICTED: uncharacterized protein LOC105648535 [Jatropha curcas]
15 Hb_000022_240 0.2906695973 - - PREDICTED: uncharacterized protein LOC105638288 [Jatropha curcas]
16 Hb_001369_500 0.2959780862 - - endo-1,4-beta-glucanase, putative [Ricinus communis]
17 Hb_002320_050 0.2981373274 - - clathrin assembly family protein [Populus trichocarpa]
18 Hb_008453_040 0.3003945188 - - PREDICTED: expansin-A11 [Jatropha curcas]
19 Hb_002641_170 0.3013468808 - - zinc finger protein, putative [Ricinus communis]
20 Hb_001810_040 0.3048107391 - - -

Gene co-expression network

sample Hb_000170_170 Hb_000170_170 Hb_020259_020 Hb_020259_020 Hb_000170_170--Hb_020259_020 Hb_010866_020 Hb_010866_020 Hb_000170_170--Hb_010866_020 Hb_005870_010 Hb_005870_010 Hb_000170_170--Hb_005870_010 Hb_006469_110 Hb_006469_110 Hb_000170_170--Hb_006469_110 Hb_002309_030 Hb_002309_030 Hb_000170_170--Hb_002309_030 Hb_004308_010 Hb_004308_010 Hb_000170_170--Hb_004308_010 Hb_020259_020--Hb_005870_010 Hb_020259_020--Hb_002309_030 Hb_020259_020--Hb_010866_020 Hb_020259_020--Hb_004308_010 Hb_000181_370 Hb_000181_370 Hb_020259_020--Hb_000181_370 Hb_010866_020--Hb_005870_010 Hb_000347_520 Hb_000347_520 Hb_010866_020--Hb_000347_520 Hb_010866_020--Hb_004308_010 Hb_010866_020--Hb_006469_110 Hb_087388_010 Hb_087388_010 Hb_010866_020--Hb_087388_010 Hb_005870_010--Hb_087388_010 Hb_005870_010--Hb_004308_010 Hb_005870_010--Hb_000347_520 Hb_006469_110--Hb_002309_030 Hb_006469_110--Hb_000347_520 Hb_122079_010 Hb_122079_010 Hb_006469_110--Hb_122079_010 Hb_061335_010 Hb_061335_010 Hb_006469_110--Hb_061335_010 Hb_000053_150 Hb_000053_150 Hb_006469_110--Hb_000053_150 Hb_010812_080 Hb_010812_080 Hb_006469_110--Hb_010812_080 Hb_003333_070 Hb_003333_070 Hb_002309_030--Hb_003333_070 Hb_002309_030--Hb_004308_010 Hb_008535_020 Hb_008535_020 Hb_002309_030--Hb_008535_020 Hb_000188_080 Hb_000188_080 Hb_002309_030--Hb_000188_080 Hb_002186_120 Hb_002186_120 Hb_002309_030--Hb_002186_120 Hb_004308_010--Hb_003333_070 Hb_000577_060 Hb_000577_060 Hb_004308_010--Hb_000577_060 Hb_000753_270 Hb_000753_270 Hb_004308_010--Hb_000753_270 Hb_004308_010--Hb_000188_080
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0 0.0162842 0.0309266 0.142725 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0.0447662 0 0 0 0

CAGE analysis