Hb_000170_210

Information

Type -
Description -
Location Contig170: 282076-286180
Sequence    

Annotation

kegg
ID rcu:RCOM_0562410
description pentatricopeptide repeat-containing protein, putative
nr
ID XP_002520317.1
description pentatricopeptide repeat-containing protein, putative [Ricinus communis]
swissprot
ID Q9FVX2
description Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2
trembl
ID B9S2U8
description Pentatricopeptide repeat-containing protein, putative OS=Ricinus communis GN=RCOM_0562410 PE=4 SV=1
Gene Ontology
ID -
description -

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_210 0.0 - - pentatricopeptide repeat-containing protein, putative [Ricinus communis]
2 Hb_003175_010 0.0601956348 - - PREDICTED: 39S ribosomal protein L4, mitochondrial [Jatropha curcas]
3 Hb_000796_220 0.0690744191 - - PREDICTED: uncharacterized protein LOC105642644 isoform X3 [Jatropha curcas]
4 Hb_002044_080 0.0697748946 - - PREDICTED: secretion-regulating guanine nucleotide exchange factor isoform X2 [Jatropha curcas]
5 Hb_000808_230 0.071522233 - - PREDICTED: peptide chain release factor PrfB2, chloroplastic [Jatropha curcas]
6 Hb_000395_170 0.075548951 - - PREDICTED: probable transcriptional regulatory protein At2g25830 [Jatropha curcas]
7 Hb_000926_280 0.0781342541 - - ubiquitin-activating enzyme E1, putative [Ricinus communis]
8 Hb_002530_030 0.0783879267 - - PREDICTED: RNA polymerase II C-terminal domain phosphatase-like 4 [Jatropha curcas]
9 Hb_006185_050 0.0800649473 - - hypothetical protein POPTR_0001s20590g [Populus trichocarpa]
10 Hb_048937_040 0.0810326059 - - APO protein 4, mitochondrial precursor, putative [Ricinus communis]
11 Hb_006064_010 0.0813335269 - - PREDICTED: DDB1- and CUL4-associated factor 4 [Jatropha curcas]
12 Hb_003728_080 0.0819952781 transcription factor TF Family: FAR1 PREDICTED: protein FAR-RED ELONGATED HYPOCOTYL 3-like [Jatropha curcas]
13 Hb_000690_130 0.0822843801 - - PREDICTED: uncharacterized protein LOC105631771 [Jatropha curcas]
14 Hb_000030_300 0.0826822817 - - Thioredoxin, putative [Ricinus communis]
15 Hb_007317_210 0.0833705777 - - PREDICTED: probable calcium-binding protein CML48 [Jatropha curcas]
16 Hb_004109_090 0.0845384965 - - ubiquitin-protein ligase, putative [Ricinus communis]
17 Hb_001545_120 0.0849787273 - - PREDICTED: pentatricopeptide repeat-containing protein At1g34160 [Jatropha curcas]
18 Hb_002496_030 0.0853578164 - - PREDICTED: putative pentatricopeptide repeat-containing protein At1g69350, mitochondrial [Jatropha curcas]
19 Hb_011139_030 0.0857521458 - - PREDICTED: E3 ubiquitin-protein ligase MBR2-like [Jatropha curcas]
20 Hb_004221_020 0.0866875065 - - protein binding protein, putative [Ricinus communis]

Gene co-expression network

sample Hb_000170_210 Hb_000170_210 Hb_003175_010 Hb_003175_010 Hb_000170_210--Hb_003175_010 Hb_000796_220 Hb_000796_220 Hb_000170_210--Hb_000796_220 Hb_002044_080 Hb_002044_080 Hb_000170_210--Hb_002044_080 Hb_000808_230 Hb_000808_230 Hb_000170_210--Hb_000808_230 Hb_000395_170 Hb_000395_170 Hb_000170_210--Hb_000395_170 Hb_000926_280 Hb_000926_280 Hb_000170_210--Hb_000926_280 Hb_000808_270 Hb_000808_270 Hb_003175_010--Hb_000808_270 Hb_003175_010--Hb_000926_280 Hb_019280_040 Hb_019280_040 Hb_003175_010--Hb_019280_040 Hb_000030_300 Hb_000030_300 Hb_003175_010--Hb_000030_300 Hb_003766_040 Hb_003766_040 Hb_003175_010--Hb_003766_040 Hb_048937_040 Hb_048937_040 Hb_003175_010--Hb_048937_040 Hb_000796_220--Hb_000808_230 Hb_004109_090 Hb_004109_090 Hb_000796_220--Hb_004109_090 Hb_001675_180 Hb_001675_180 Hb_000796_220--Hb_001675_180 Hb_085781_010 Hb_085781_010 Hb_000796_220--Hb_085781_010 Hb_000832_020 Hb_000832_020 Hb_000796_220--Hb_000832_020 Hb_000056_200 Hb_000056_200 Hb_002044_080--Hb_000056_200 Hb_058999_020 Hb_058999_020 Hb_002044_080--Hb_058999_020 Hb_006502_090 Hb_006502_090 Hb_002044_080--Hb_006502_090 Hb_001242_060 Hb_001242_060 Hb_002044_080--Hb_001242_060 Hb_000120_790 Hb_000120_790 Hb_002044_080--Hb_000120_790 Hb_000085_050 Hb_000085_050 Hb_002044_080--Hb_000085_050 Hb_006400_060 Hb_006400_060 Hb_000808_230--Hb_006400_060 Hb_007426_030 Hb_007426_030 Hb_000808_230--Hb_007426_030 Hb_044728_010 Hb_044728_010 Hb_000808_230--Hb_044728_010 Hb_001545_120 Hb_001545_120 Hb_000808_230--Hb_001545_120 Hb_000395_170--Hb_003175_010 Hb_000395_170--Hb_000926_280 Hb_148912_010 Hb_148912_010 Hb_000395_170--Hb_148912_010 Hb_000395_170--Hb_048937_040 Hb_000089_220 Hb_000089_220 Hb_000395_170--Hb_000089_220 Hb_000395_170--Hb_004109_090 Hb_000926_280--Hb_000030_300 Hb_007951_060 Hb_007951_060 Hb_000926_280--Hb_007951_060 Hb_011689_080 Hb_011689_080 Hb_000926_280--Hb_011689_080 Hb_002391_300 Hb_002391_300 Hb_000926_280--Hb_002391_300 Hb_000327_120 Hb_000327_120 Hb_000926_280--Hb_000327_120
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
4.21862 2.16775 2.95689 1.7814 5.23835 6.07086
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
2.97048 5.52772 5.05979 3.24834 2.54509

CAGE analysis