Hb_000170_230

Information

Type -
Description -
Location Contig170: 288774-290564
Sequence    

Annotation

kegg
ID pop:POPTR_0005s20420g
description POPTRDRAFT_1078580; hypothetical protein
nr
ID XP_012078262.1
description PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
swissprot
ID O04086
description Probable receptor-like protein kinase At1g11050 OS=Arabidopsis thaliana GN=At1g11050 PE=2 SV=1
trembl
ID B9H7I7
description Uncharacterized protein OS=Populus trichocarpa GN=POPTR_0005s20420g PE=3 SV=2
Gene Ontology
ID GO:0004674
description probable receptor-like protein kinase at1g11050

Full-length cDNA clone information

cDNA+EST
(Sanger&Illumina)
(ID:Location)		 -
cDNA
(Sanger)
(ID:Location)		 -

Similar expressed genes (Top20)


Rank Gene Score (JSD) Function Description NCBI(nr) information
1 Hb_000170_230 0.0 - - PREDICTED: probable receptor-like protein kinase At1g11050 isoform X1 [Jatropha curcas]
2 Hb_000532_060 0.0805467651 - - copper-transporting atpase p-type, putative [Ricinus communis]
3 Hb_046117_050 0.0850736823 transcription factor TF Family: C2H2 hypothetical protein POPTR_0009s14590g [Populus trichocarpa]
4 Hb_001691_190 0.1022501494 - - conserved hypothetical protein [Ricinus communis]
5 Hb_000345_190 0.1042290974 transcription factor TF Family: C2H2 hypothetical protein POPTR_0005s02730g [Populus trichocarpa]
6 Hb_001487_020 0.1149160269 - - PREDICTED: probable sulfate transporter 3.5 isoform X1 [Jatropha curcas]
7 Hb_005081_080 0.1158461287 - - hypothetical protein JCGZ_16787 [Jatropha curcas]
8 Hb_004586_380 0.1166527839 - - purine transporter, putative [Ricinus communis]
9 Hb_003376_340 0.1190362677 - - conserved hypothetical protein [Ricinus communis]
10 Hb_006351_080 0.1229332601 - - hypothetical protein B456_011G275400 [Gossypium raimondii]
11 Hb_150643_010 0.1254446815 - - lipid binding protein, putative [Ricinus communis]
12 Hb_012055_100 0.126742797 - - heat shock protein 70 (HSP70)-interacting protein, putative [Ricinus communis]
13 Hb_047690_010 0.1343347991 - - Phosphoprotein phosphatase [Theobroma cacao]
14 Hb_000128_010 0.1454152015 - - dimethylaniline monooxygenase, putative [Ricinus communis]
15 Hb_045810_010 0.1457170899 - - PREDICTED: laccase-12-like [Jatropha curcas]
16 Hb_151281_010 0.149266155 - - PREDICTED: LOW QUALITY PROTEIN: probable L-type lectin-domain containing receptor kinase S.5 [Jatropha curcas]
17 Hb_079955_010 0.1506569153 transcription factor TF Family: MYB-related PREDICTED: myb-related protein Myb4-like [Populus euphratica]
18 Hb_135811_020 0.151267346 - - hypothetical protein JCGZ_19965 [Jatropha curcas]
19 Hb_000270_010 0.1515598688 - - conserved hypothetical protein [Ricinus communis]
20 Hb_007785_020 0.1540746769 desease resistance Gene Name: NB-ARC PREDICTED: TMV resistance protein N-like isoform X1 [Jatropha curcas]

Gene co-expression network

sample Hb_000170_230 Hb_000170_230 Hb_000532_060 Hb_000532_060 Hb_000170_230--Hb_000532_060 Hb_046117_050 Hb_046117_050 Hb_000170_230--Hb_046117_050 Hb_001691_190 Hb_001691_190 Hb_000170_230--Hb_001691_190 Hb_000345_190 Hb_000345_190 Hb_000170_230--Hb_000345_190 Hb_001487_020 Hb_001487_020 Hb_000170_230--Hb_001487_020 Hb_005081_080 Hb_005081_080 Hb_000170_230--Hb_005081_080 Hb_000532_060--Hb_000345_190 Hb_000532_060--Hb_046117_050 Hb_003376_340 Hb_003376_340 Hb_000532_060--Hb_003376_340 Hb_150643_010 Hb_150643_010 Hb_000532_060--Hb_150643_010 Hb_000532_060--Hb_001487_020 Hb_046117_050--Hb_001487_020 Hb_046117_050--Hb_003376_340 Hb_046117_050--Hb_000345_190 Hb_046117_050--Hb_005081_080 Hb_131591_010 Hb_131591_010 Hb_001691_190--Hb_131591_010 Hb_000270_010 Hb_000270_010 Hb_001691_190--Hb_000270_010 Hb_029866_140 Hb_029866_140 Hb_001691_190--Hb_029866_140 Hb_004586_380 Hb_004586_380 Hb_001691_190--Hb_004586_380 Hb_133646_010 Hb_133646_010 Hb_001691_190--Hb_133646_010 Hb_135811_020 Hb_135811_020 Hb_000345_190--Hb_135811_020 Hb_106969_010 Hb_106969_010 Hb_000345_190--Hb_106969_010 Hb_005396_100 Hb_005396_100 Hb_000345_190--Hb_005396_100 Hb_047690_010 Hb_047690_010 Hb_001487_020--Hb_047690_010 Hb_001487_020--Hb_150643_010 Hb_001487_020--Hb_135811_020 Hb_003253_060 Hb_003253_060 Hb_001487_020--Hb_003253_060 Hb_001487_020--Hb_005081_080 Hb_081448_010 Hb_081448_010 Hb_005081_080--Hb_081448_010 Hb_001021_140 Hb_001021_140 Hb_005081_080--Hb_001021_140 Hb_069232_010 Hb_069232_010 Hb_005081_080--Hb_069232_010
Green: transcription factors, Orange: rubber biosynthesis, Blue: desease resistance

Expression pattern by RNA-Seq analysis

RRIM600_Latex RRIM600_Bark RRIM600_Leaf RRIM600_Petiole PB350_Latex RRIM901_Latex
0.0112232 1.24929 0.0166729 0.180043 0 0
RRII105_Latex_C RRII105_Latex_S RRIM928_Latex RRIM928_Bark RRIM928_Leaf
0 0 0 0.423984 0

CAGE analysis